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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148265 (65 seq.)
>W1711126423
LUOO01000086
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23267
23343
+
Arg
CCT
[ENA]
¡û
>W1711642846
MPZQ01000006
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
82910
82986
+
Arg
CCT
[ENA]
¡û
>W1711642884
MPZR01000004
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
228642
228718
+
Arg
CCT
[ENA]
¡û
>W1711642990
MPZT01000006
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
215218
215142
-
Arg
CCT
[ENA]
¡û
>W1711643021
MPZU01000003
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
227713
227789
+
Arg
CCT
[ENA]
¡û
>W1711643077
MPZV01000004
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
229302
229378
+
Arg
CCT
[ENA]
¡û
>W1711643174
MPZX01000004
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
215341
215265
-
Arg
CCT
[ENA]
¡û
>W1711947211
NBNX01000004
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
210584
210660
+
Arg
CCT
[ENA]
¡û
>W1711947259
NBNY01000003
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
215711
215635
-
Arg
CCT
[ENA]
¡û
>W1711947305
NBNZ01000005
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
215748
215672
-
Arg
CCT
[ENA]
¡û
>W1711947344
NBOA01000004
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
230709
230633
-
Arg
CCT
[ENA]
¡û
>W1711947391
NBOB01000005
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
215728
215652
-
Arg
CCT
[ENA]
¡û
>W1711958990
NBXF01000003
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
216342
216266
-
Arg
CCT
[ENA]
¡û
>W131050047
AMWC01000089
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
3042
3118
+
Arg
CCT
[ENA]
¡û
>W131164660
ARAY01000025
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
46956
47032
+
Arg
CCT
[ENA]
¡û
>C171032431
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
2015237
2015313
+
Arg
CCT
-
¡û
>C171033683
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
1897339
1897415
+
Arg
CCT
-
¡û
>C171035426
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
2165567
2165643
+
Arg
CCT
-
¡û
>C171094378
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
300491
300415
-
Arg
CCT
-
¡û
>w023640
AAYA01000008
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
116045
115967
-
Arg
CCT
[ENA]
¡û
>WENV180105738
OAPD01176784
[OAPD] marine metagenome; 2010
326
250
-
Arg
CCT
[ENA]
¢þ
>WENV180209788
OBAL01022203
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
341
265
-
Arg
CCT
[ENA]
¢þ
>W141065866
AQRC01000006
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
55049
54973
-
Arg
CCT
[ENA]
¡û
>W141142900
AWRV01000166
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
4878
4954
+
Arg
CCT
[ENA]
¡û
>WENV182592982
OJIS01003940
[OJIS] seawater metagenome; Sea water
3099
3023
-
Arg
CCT
[ENA]
¢þ
>W141290292
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
3134975
3134899
-
Arg
CCT
[ENA]
¡û
>WENV170013089
ATLU01000003
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
168013
167937
-
Arg
CCT
[ENA]
¢þ
>WENV170229277
CEQG01096996
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
182
258
+
Arg
CCT
[ENA]
¢þ
>WENV170484411
CEVN01020220
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1754
1830
+
Arg
CCT
[ENA]
¢þ
>WENV170550780
CXWF01025100
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5434
5510
+
Arg
CCT
[ENA]
¢þ
>WENV170739264
LULQ01000073
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
23267
23343
+
Arg
CCT
[ENA]
¢þ
>WENV170760954
LUMU01002173
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
2241
2165
-
Arg
CCT
[ENA]
¢þ
>WENV170803296
MDSW01027831
[MDSW] marine metagenome; seawater
12001
12077
+
Arg
CCT
[ENA]
¢þ
>WENV170921353
MDTG01012617
[MDTG] marine metagenome; seawater
35435
35511
+
Arg
CCT
[ENA]
¢þ
>WENV170923271
MDTG01046425
[MDTG] marine metagenome; seawater
4819
4743
-
Arg
CCT
[ENA]
¢þ
>WENV170926033
MDTG01093857
[MDTG] marine metagenome; seawater
11205
11129
-
Arg
CCT
[ENA]
¢þ
>WENV170931505
MDTG01185939
[MDTG] marine metagenome; seawater
2936
2860
-
Arg
CCT
[ENA]
¢þ
>C181054589
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
1436690
1436614
-
Arg
CCT
-
¡û
>C181060515
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
565359
565435
+
Arg
CCT
-
¡û
>C191184391
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
410491
410567
+
Arg
CCT
-
¡û
>W1910499014
FXXP01000001
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
406592
406516
-
Arg
CCT
[ENA]
¡û
>W1910547103
FZNN01000002
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
321977
322053
+
Arg
CCT
[ENA]
¡û
>W1911281151
NTHN01000068
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
5133
5057
-
Arg
CCT
[ENA]
¡û
>W1911538446
OMOJ01000001
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
180604
180528
-
Arg
CCT
[ENA]
¡û
>W1911575792
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
78084
78160
+
Arg
CCT
[ENA]
¡û
>W1810364951
PVTQ01000003
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
311162
311238
+
Arg
CCT
[ENA]
¡û
>W1810368919
PWAA01000041
Alphaproteobacteria
Thalassobius sp. I31.1 [PWAA]
5725
5801
+
Arg
CCT
[ENA]
¡û
>W1810570015
QEHM01000003
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
808160
808236
+
Arg
CCT
[ENA]
¡û
>W1810580456
QETF01000013
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
31271
31195
-
Arg
CCT
[ENA]
¡û
>W1810584532
QFBB01000004
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
255306
255230
-
Arg
CCT
[ENA]
¡û
>W1610014733
AONG01000004
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
6085
6009
-
Arg
CCT
[ENA]
¡û
>W1610937356
LUOO01000086
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23267
23343
+
Arg
CCT
[ENA]
¡û
>W1710011624
AONG01000004
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
6085
6009
-
Arg
CCT
[ENA]
¡û
>W1710015565
AQQU01000001
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
825710
825634
-
Arg
CCT
[ENA]
¡û
>W1710516232
FNCL01000004
Alphaproteobacteria
Alloyangia pacifica [FNCL]
190458
190534
+
Arg
CCT
[ENA]
¡û
>W1710530934
FNPF01000004
Alphaproteobacteria
Citreimonas salinaria [FNPF]
110466
110542
+
Arg
CCT
[ENA]
¡û
>W1710531902
FNPX01000001
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
251992
252068
+
Arg
CCT
[ENA]
¡û
>W1710539016
FNUZ01000003
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
43958
43882
-
Arg
CCT
[ENA]
¡û
>W1710546874
FOCM01000006
Alphaproteobacteria
Palleronia pelagia pelagius [FOCM]
36356
36432
+
Arg
CCT
[ENA]
¡û
>W1710558248
FOLR01000008
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
36892
36816
-
Arg
CCT
[ENA]
¡û
>W1710576227
FOZW01000004
Alphaproteobacteria
Alloyangia pacifica [FOZW]
190458
190534
+
Arg
CCT
[ENA]
¡û
>W1710586329
FQXC01000003
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
725056
725132
+
Arg
CCT
[ENA]
¡û
>W1710588020
FQZA01000003
Alphaproteobacteria
Palleronia salina salinus [FQZA]
119165
119241
+
Arg
CCT
[ENA]
¡û
>W1710616691
JFKC01000007
Alphaproteobacteria
Marivita geojedonensis [JFKC]
73618
73542
-
Arg
CCT
[ENA]
¡û
>W1710616745
JFKD01000010
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
103038
103114
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK