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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148272 (56 seq.)
>W1710891824
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3358
3434
+
Val
GAC
[ENA]
¡û
>W1710923801
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19962
20038
+
Val
GAC
[ENA]
¡û
>W1711312271
MASS01000047
Bacillota
Desulfosporosinus sp. BG [MASS]
30727
30651
-
Val
GAC
[ENA]
¡û
>W1711342462
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
22985
22909
-
Val
GAC
[ENA]
¡û
>W1711510584
MLBF01000054
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2714
2790
+
Val
GAC
[ENA]
¡û
>W1711926244
NADJ01000002
Bacillota
Desulfosporosinus sp. FKB [NADJ]
5037
5113
+
Val
GAC
[ENA]
¡û
>W1711932729
NAHZ01000006
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
24794
24718
-
Val
GAC
[ENA]
¡û
>W131162561
AQYY01000026
Bacillota
Dehalobacter sp. FTH1 [AQYY]
2700
2624
-
Val
GAC
[ENA]
¡û
>W131162753
AQZD01000021
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
63322
63246
-
Val
GAC
[ENA]
¡û
>W131162813
AQZF01000003
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
19885
19961
+
Val
GAC
[ENA]
¡û
>W131164691
ARAZ01000026
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
60350
60274
-
Val
GAC
[ENA]
¡û
>C007778
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
262182
262258
+
Val
GAC
[Ensembl]
¡û
>WENV180262360
OBEQ011380160
[OBEQ] groundwater metagenome; groundwater
996
920
-
Val
GAC
[ENA]
¢þ
>w002168
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
381540
381467
-
Val
GAC
[ENA]
¡û
>W141088283
AUUR01000065
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
1993
1917
-
Val
GAC
[ENA]
¡û
>W141246569
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8855
8931
+
Val
GAC
[ENA]
¡û
>W141246607
CANF01000022
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
8854
8930
+
Val
GAC
[ENA]
¡û
>WENV183672558
ORJL011181871
[ORJL] groundwater metagenome; groundwater
1237
1161
-
Val
GAC
[ENA]
¢þ
>WENV170658843
JUEG02001172
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
735
811
+
Val
GAC
[ENA]
¢þ
>WENV170658850
JUEG02001194
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
27439
27363
-
Val
GAC
[ENA]
¢þ
>WENV170784237
MCHG01000181
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
28936
28860
-
Val
GAC
[ENA]
¢þ
>C141011728
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
236075
236151
+
Val
GAC
[Ensembl]
¡û
>W1910647185
LXPC01000019
Bacillota
Dehalobacter sp. MCB1 [LXPC]
9163
9239
+
Val
GAC
[ENA]
¡û
>C09103974
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
197112
197188
+
Val
GAC
[Ensembl]
¡û
>W1911608690
PNXX01000005
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
45664
45588
-
Val
GAC
[ENA]
¡û
>W1911613575
POSF01000021
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
48318
48242
-
Val
GAC
[ENA]
¡û
>W1810047201
OMOF01000956
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
1424
1348
-
Val
GAC
[ENA]
¡û
>C151016307
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
103854
103930
+
Val
GAC
[Ensembl]
¡û
>W1511187129
JMGA01000040
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
26768
26692
-
Val
GAC
[ENA]
¡û
>W1511327371
JQID01000107
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2729
2805
+
Val
GAC
[ENA]
¡û
>C11120619
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
252904
252980
+
Val
GAC
[Ensembl]
¡û
>W1511430055
JUEE01000110
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
827
903
+
Val
GAC
[ENA]
¡û
>W1511430066
JUEE01000168
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
26035
25959
-
Val
GAC
[ENA]
¡û
>W1511533690
JYNH01000095
Bacillota
Desulfosporosinus sp. I2 [JYNH]
5090
5166
+
Val
GAC
[ENA]
¡û
>W1511644705
LDXJ01000015
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
632
556
-
Val
GAC
[ENA]
¡û
>W1511646034
LDZY01000021
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
4004
4080
+
Val
GAC
[ENA]
¡û
>W11177288
AGAF01000222
Bacillota
Desulfosporosinus sp. OT [AGAF]
22843
22767
-
Val
GAC
[ENA]
¡û
>W11181366
AGJA01000015
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
5467
5543
+
Val
GAC
[ENA]
¡û
>W11181422
AGJB01000026
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
568
492
-
Val
GAC
[ENA]
¡û
>C121005947
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
118237
118313
+
Val
GAC
[Ensembl]
¡û
>C121011414
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
161672
161748
+
Val
GAC
[Ensembl]
¡û
>C121014786
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
112927
113003
+
Val
GAC
[Ensembl]
¡û
>C121014864
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
114485
114561
+
Val
GAC
[Ensembl]
¡û
>W121007259
AFZX01000006
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
4596
4672
+
Val
GAC
[ENA]
¡û
>W121010363
AGJE01000013
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
82871
82795
-
Val
GAC
[ENA]
¡û
>W121010480
AGJG01000031
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
42140
42064
-
Val
GAC
[ENA]
¡û
>W121010534
AGJH01000017
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
58304
58228
-
Val
GAC
[ENA]
¡û
>W121036136
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
135279
135355
+
Val
GAC
[ENA]
¡û
>C131003223
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
114128
114204
+
Val
GAC
[Ensembl]
¡û
>C131008552
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2049680
2049604
-
Val
GAC
[Ensembl]
¡û
>C131008603
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079461
2079385
-
Val
GAC
[Ensembl]
¡û
>W1610752189
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3358
3434
+
Val
GAC
[ENA]
¡û
>W1610781402
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19962
20038
+
Val
GAC
[ENA]
¡û
>W1710516503
FNCP01000038
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
4259
4335
+
Val
GAC
[ENA]
¡û
>W1710586675
FQXJ01000036
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
27286
27210
-
Val
GAC
[ENA]
¡û
>W1710593540
FRDN01000020
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
6595
6671
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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