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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148345 (136 seq.)
>W1710804065
LJYY01000049
Bacillota
Lysinibacillus sphaericus [LJYY]
271
195
-
Pro
TGG
[ENA]
¡û
>W1710811125
LKIE01000104
Bacillota
Lysinibacillus sp. F5 [LKIE]
1119
1195
+
Pro
TGG
[ENA]
¡û
>W1710819589
LKPY01000026
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
1157
1234
+
Pro
TGG
[ENA]
¡û
>W1711179034
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
4171134
4171210
+
Pro
TGG
[ENA]
¡û
>W1711284633
LZRJ01000052
Bacillota
Solibacillus silvestris [LZRJ]
712
636
-
Pro
TGG
[ENA]
¡û
>W1711284648
LZRJ01000055
Bacillota
Solibacillus silvestris [LZRJ]
1196
1120
-
Pro
TGG
[ENA]
¡û
>W1711284690
LZRJ01000101
Bacillota
Solibacillus silvestris [LZRJ]
212865
212789
-
Pro
TGG
[ENA]
¡û
>W1711312127
MASJ01000038
Bacillota
Caryophanon tenue [MASJ]
148097
148021
-
Pro
TGG
[ENA]
¡û
>W1711313473
MATO01000002
Bacillota
Caryophanon latum [MATO]
88030
87954
-
Pro
TGG
[ENA]
¡û
>W1711313536
MATO01000086
Bacillota
Caryophanon latum [MATO]
2674
2598
-
Pro
TGG
[ENA]
¡û
>W1711352904
MDDN01000040
Bacillota
Lysinibacillus xylanilyticus [MDDN]
793
869
+
Pro
TGG
[ENA]
¡û
>W1711352922
MDDN01000044
Bacillota
Lysinibacillus xylanilyticus [MDDN]
388
312
-
Pro
TGG
[ENA]
¡û
>W1711356953
MDGU01000042
Bacillota
Lysinibacillus sp. AR18-8 [MDGU]
996
1072
+
Pro
TGG
[ENA]
¡û
>W1711383646
MECQ01000001
Bacillota
Lysinibacillus fusiformis [MECQ]
135774
135850
+
Pro
TGG
[ENA]
¡û
>W1712017352
NESR01000044
Bacillota
Kurthia gibsonii [NESR]
703
779
+
Pro
TGG
[ENA]
¡û
>W1712081364
NHNT01000028
Bacillota
Solibacillus kalamii [NHNT]
616
540
-
Pro
TGG
[ENA]
¡û
>W131237625
AUOZ01000003
Bacillota
Lysinibacillus sphaericus KCTC 3346 [AUOZ]
1456
1532
+
Pro
TGG
[ENA]
¡û
>w023389
AAXV01000026
Bacillota
Bacillus sp. B14905 [AAXV]
48443
48365
-
Pro
TGG
[ENA]
¡û
>W141041674
AMCK01000021
Bacillota
Solibacillus isronensis B3W22 [AMCK]
345
421
+
Pro
TGG
[ENA]
¡û
>W141041688
AMCK01000057
Bacillota
Solibacillus isronensis B3W22 [AMCK]
661
585
-
Pro
TGG
[ENA]
¡û
>W141041710
AMCK01000062
Bacillota
Solibacillus isronensis B3W22 [AMCK]
162
86
-
Pro
TGG
[ENA]
¡û
>W141186619
AYKQ01000063
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
345
421
+
Pro
TGG
[ENA]
¡û
>W141186645
AYKQ01000081
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
105
181
+
Pro
TGG
[ENA]
¡û
>W141186666
AYKQ01000089
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
864
940
+
Pro
TGG
[ENA]
¡û
>W141187879
AYMK01000013
Bacillota
Lysinibacillus fusiformis H1k [AYMK]
242052
241976
-
Pro
TGG
[ENA]
¡û
>W141194432
AYTB01000009
Bacillota
Kurthia huakuii LAM0618 [AYTB]
6250
6174
-
Pro
TGG
[ENA]
¡û
>W141194485
AYTB01000022
Bacillota
Kurthia huakuii LAM0618 [AYTB]
7702
7626
-
Pro
TGG
[ENA]
¡û
>W141194496
AYTB01000024
Bacillota
Kurthia huakuii LAM0618 [AYTB]
5562
5486
-
Pro
TGG
[ENA]
¡û
>W141239534
CAEP01000247
Bacillota
Kurthia sp. Dielmo [CAEP]
1
77
+
Pro
TGG
[ENA]
¡û
>W141239782
CAEU01000074
Bacillota
Kurthia massiliensis JC30 [CAEU]
713
789
+
Pro
TGG
[ENA]
¡û
>W141239822
CAEU01000105
Bacillota
Kurthia massiliensis JC30 [CAEU]
3
79
+
Pro
TGG
[ENA]
¡û
>W141239960
CAEW01000052
Bacillota
Kurthia senegalensis JC8E [CAEW]
45
121
+
Pro
TGG
[ENA]
¡û
>C08006249
CP000817
Bacillota
Lysinibacillus sphaericus C3-41 [CP000817]
764497
764573
+
Pro
TGG
[Ensembl]
¡û
>WENV170669667
LAHS01001187
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
21064
20988
-
Pro
TGG
[ENA]
¢þ
>WENV170965242
MTET01005425
[MTET] soil metagenome; garden soil control
686
610
-
Pro
TGG
[ENA]
¢þ
>WENV170965572
MTEU01004250
[MTEU] soil metagenome; naturally attenuated soil
1081
1157
+
Pro
TGG
[ENA]
¢þ
>WENV170966391
MTEX01008627
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
609
533
-
Pro
TGG
[ENA]
¢þ
>C181042039
CP019980
Bacillota
Lysinibacillus sphaericus DSM 28 [CP019980]
4449495
4449419
-
Pro
TGG
-
¡û
>C181095447
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
106799
106875
+
Pro
TGG
-
¡û
>C181095457
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
239073
239149
+
Pro
TGG
-
¡û
>C181095506
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
3371335
3371259
-
Pro
TGG
-
¡û
>C181095526
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
3368364
3368288
-
Pro
TGG
-
¡û
>C181125114
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
283330
283406
+
Pro
TGG
-
¡û
>C181147675
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
320855
320931
+
Pro
TGG
-
¡û
>C181171315
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
227665
227741
+
Pro
TGG
-
¡û
>C181171340
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
1533709
1533782
+
Pro
TGG
-
¡û
>C181171394
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
2858078
2858002
-
Pro
TGG
-
¡û
>C181171413
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
2855290
2855214
-
Pro
TGG
-
¡û
>C191040603
CP026120
Bacillota
Lysinibacillus sphaericus KCCM 35418 [CP026120]
3844709
3844785
+
Pro
TGG
-
¡û
>C191211403
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
2940793
2940717
-
Pro
TGG
-
¡û
>C191211425
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
708811
708735
-
Pro
TGG
-
¡û
>W141704196
JMMU01000011
Bacillota
Lysinibacillus sphaericus [JMMU]
147
71
-
Pro
TGG
[ENA]
¡û
>W141800967
JPDK01000123
Bacillota
Lysinibacillus sphaericus [JPDK]
871
947
+
Pro
TGG
[ENA]
¡û
>W141800989
JPDL01000042
Bacillota
Lysinibacillus sphaericus [JPDL]
137678
137602
-
Pro
TGG
[ENA]
¡û
>W141801523
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
1770783
1770860
+
Pro
TGG
[ENA]
¡û
>W141822560
JRBA01000002
Bacillota
Lysinibacillus fusiformis [JRBA]
1127
1204
+
Pro
TGG
[ENA]
¡û
>W1910183837
BJOB01000110
Bacillota
Kurthia gibsonii NBRC 15534 [BJOB]
679
755
+
Pro
TGG
[ENA]
¡û
>W1910184316
BJOM01000065
Bacillota
Lysinibacillus fusiformis NBRC 15717 [BJOM]
646
722
+
Pro
TGG
[ENA]
¡û
>W1910438088
FVZN01000011
Bacillota
Solibacillus isronensis Marseille-P3605 [FVZN]
188304
188228
-
Pro
TGG
[ENA]
¡û
>W1910577282
JTFC01000003
Bacillota
Kurthia sp. 3B1D [JTFC]
69425
69349
-
Pro
TGG
[ENA]
¡û
>W1910577319
JTFC01000031
Bacillota
Kurthia sp. 3B1D [JTFC]
905522
905446
-
Pro
TGG
[ENA]
¡û
>W1910827347
MWSJ01000007
Bacillota
Lysinibacillus sp. KCTC 33748 [MWSJ]
176222
176146
-
Pro
TGG
[ENA]
¡û
>W1910827384
MWSJ01000020
Bacillota
Lysinibacillus sp. KCTC 33748 [MWSJ]
1296
1372
+
Pro
TGG
[ENA]
¡û
>W1911285030
NTMQ01000003
Bacillota
Lysinibacillus fusiformis GM [NTMQ]
212062
212138
+
Pro
TGG
[ENA]
¡û
>W1911325634
NUJB01000007
Bacillota
Bacillus cereus AFS048015 [NUJB]
5428
5504
+
Pro
TGG
[ENA]
¡û
>W1911349011
NUVX01000089
Bacillota
Bacillus thuringiensis AFS085496 [NUVX]
5941
6017
+
Pro
TGG
[ENA]
¡û
>W1911380086
NVMX01000293
Bacillota
Bacillus cereus AFS092789 [NVMX]
5262
5186
-
Pro
TGG
[ENA]
¡û
>W1911817987
QZNE01000015
Bacillota
Kurthia gibsonii B83 [QZNE]
39
115
+
Pro
TGG
[ENA]
¡û
>W1810054506
PDFK01000022
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
596
520
-
Pro
TGG
[ENA]
¡û
>W1810100661
PGLV01000001
Bacillota
Lysinibacillus sphaericus A1 [PGLV]
3304237
3304161
-
Pro
TGG
[ENA]
¡û
>W1810118710
PHQY01000008
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
1193
1117
-
Pro
TGG
[ENA]
¡û
>W1810118734
PHQY01000347
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
724
800
+
Pro
TGG
[ENA]
¡û
>W1810118761
PHQY01000559
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
172
96
-
Pro
TGG
[ENA]
¡û
>W1810118785
PHQY01000609
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
1341
1417
+
Pro
TGG
[ENA]
¡û
>W1810118835
PHQY01000735
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
954
1030
+
Pro
TGG
[ENA]
¡û
>W1810389708
PXXX01000014
Bacillota
Lysinibacillus capsici PB300 [PXXX]
1015
1091
+
Pro
TGG
[ENA]
¡û
>W1810389782
PXXY01000017
Bacillota
Lysinibacillus fusiformis NRRL NRS-350 [PXXY]
66272
66196
-
Pro
TGG
[ENA]
¡û
>W1810424015
PYUE01000005
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
345638
345562
-
Pro
TGG
[ENA]
¡û
>W1810426521
PYWG01000031
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
326
402
+
Pro
TGG
[ENA]
¡û
>W1810426600
PYWH01000030
Bacillota
Lysinibacillus parviboronicapiens VT1066 [PYWH]
326
402
+
Pro
TGG
[ENA]
¡û
>W1810426698
PYWI01000075
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
1086
1010
-
Pro
TGG
[ENA]
¡û
>W1810426960
PYWL01000015
Bacillota
Lysinibacillus fusiformis ATCC 7055 [PYWL]
66379
66303
-
Pro
TGG
[ENA]
¡û
>W1810427020
PYWM01000050
Bacillota
Lysinibacillus mangiferihumi M-GX18 [PYWM]
1549
1625
+
Pro
TGG
[ENA]
¡û
>W1810471050
QAFW01000033
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
24936
24860
-
Pro
TGG
[ENA]
¡û
>W1810591538
QFVR01000016
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
72248
72172
-
Pro
TGG
[ENA]
¡û
>W1810591591
QFVS01000002
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
125848
125772
-
Pro
TGG
[ENA]
¡û
>C151013131
CP006837
Bacillota
Lysinibacillus varians GY32 [CP006837]
223459
223535
+
Pro
TGG
[Ensembl]
¡û
>C151073089
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
4593839
4593762
-
Pro
TGG
[Ensembl]
¡û
>W10115366
ADJR01000051
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
987
1063
+
Pro
TGG
[ENA]
¡û
>W1511316233
JPVR01000030
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [JPVR]
229
153
-
Pro
TGG
[ENA]
¡û
>W11118952
ADJR01000051
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
987
1063
+
Pro
TGG
[ENA]
¡û
>W1511392240
JSZM01000008
Bacillota
Lysinibacillus sp. A1 [JSZM]
205324
205247
-
Pro
TGG
[ENA]
¡û
>C11121774
AP012157
Bacillota
Solibacillus silvestris StLB046 [AP012157]
1193170
1193246
+
Pro
TGG
[Ensembl]
¡û
>C11121793
AP012157
Bacillota
Solibacillus silvestris StLB046 [AP012157]
3865724
3865648
-
Pro
TGG
[Ensembl]
¡û
>C11121822
AP012157
Bacillota
Solibacillus silvestris StLB046 [AP012157]
5466
5390
-
Pro
TGG
[Ensembl]
¡û
>W1511640646
LDUJ01000011
Bacillota
Lysinibacillus sp. LK3 [LDUJ]
73880
73804
-
Pro
TGG
[ENA]
¡û
>W1511689783
LFXJ01000006
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
443
519
+
Pro
TGG
[ENA]
¡û
>W1511689801
LFXJ01000006
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
5562
5638
+
Pro
TGG
[ENA]
¡û
>W1511689819
LFXJ01000008
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
6174
6250
+
Pro
TGG
[ENA]
¡û
>W1511694856
LGCI01000002
Bacillota
Lysinibacillus macroides DSM 54 [LGCI]
416448
416372
-
Pro
TGG
[ENA]
¡û
>W1511705619
LGRV01000003
Bacillota
Lysinibacillus contaminans DSM 25560 [LGRV]
3095
3171
+
Pro
TGG
[ENA]
¡û
>C161053249
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
713449
713525
+
Pro
TGG
[Ensembl]
¡û
>C161053275
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
2766292
2766216
-
Pro
TGG
[Ensembl]
¡û
>C161074271
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
3838577
3838653
+
Pro
TGG
-
¡û
>C161074283
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
3937889
3937965
+
Pro
TGG
-
¡û
>C161074331
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
2624732
2624656
-
Pro
TGG
-
¡û
>C161074350
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
2621838
2621762
-
Pro
TGG
-
¡û
>C161075011
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
422302
422226
-
Pro
TGG
-
¡û
>C161078447
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
973582
973658
+
Pro
TGG
-
¡û
>C161084681
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
4075277
4075353
+
Pro
TGG
-
¡û
>W1610045512
BBBP01000102
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
420
496
+
Pro
TGG
[ENA]
¡û
>W1610046559
BBCN01000097
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
1002
1078
+
Pro
TGG
[ENA]
¡û
>W1610047533
BBDJ01000017
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1195
1271
+
Pro
TGG
[ENA]
¡û
>W1610667922
LJYY01000049
Bacillota
Lysinibacillus sphaericus [LJYY]
271
195
-
Pro
TGG
[ENA]
¡û
>W1610675180
LKIE01000104
Bacillota
Lysinibacillus sp. F5 [LKIE]
1119
1195
+
Pro
TGG
[ENA]
¡û
>W1610683551
LKPY01000026
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
1157
1234
+
Pro
TGG
[ENA]
¡û
>W1610986986
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
4171134
4171210
+
Pro
TGG
[ENA]
¡û
>W1611042418
LZRJ01000052
Bacillota
Solibacillus silvestris [LZRJ]
712
636
-
Pro
TGG
[ENA]
¡û
>W1611042433
LZRJ01000055
Bacillota
Solibacillus silvestris [LZRJ]
1196
1120
-
Pro
TGG
[ENA]
¡û
>W1611042475
LZRJ01000101
Bacillota
Solibacillus silvestris [LZRJ]
212865
212789
-
Pro
TGG
[ENA]
¡û
>W1611057328
MASJ01000038
Bacillota
Caryophanon tenue [MASJ]
148097
148021
-
Pro
TGG
[ENA]
¡û
>W1611058526
MATO01000002
Bacillota
Caryophanon latum [MATO]
88030
87954
-
Pro
TGG
[ENA]
¡û
>W1611058589
MATO01000086
Bacillota
Caryophanon latum [MATO]
2674
2598
-
Pro
TGG
[ENA]
¡û
>W1710022845
AVCW01000052
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [AVCW]
229
153
-
Pro
TGG
[ENA]
¡û
>W1710042353
BBBP01000102
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
420
496
+
Pro
TGG
[ENA]
¡û
>W1710043332
BBCN01000097
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
1002
1078
+
Pro
TGG
[ENA]
¡û
>W1710044138
BBDJ01000017
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1195
1271
+
Pro
TGG
[ENA]
¡û
>W1710506011
FMUG01000007
Bacillota
Lysinibacillus fusiformis SG8 [FMUG]
1286
1362
+
Pro
TGG
[ENA]
¡û
>W1710506478
FMUO01000030
Bacillota
Lysinibacillus sp. SG9 [FMUO]
747
823
+
Pro
TGG
[ENA]
¡û
>W1710507892
FMVP01000019
Bacillota
Lysinibacillus fusiformis LD79 [FMVP]
67984
67907
-
Pro
TGG
[ENA]
¡û
>W1710510216
FMXU01000027
Bacillota
Lysinibacillus sp. TC-37 [FMXU]
26366
26290
-
Pro
TGG
[ENA]
¡û
>W1710547130
FOCR01000019
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
1197
1274
+
Pro
TGG
[ENA]
¡û
>W1710549361
FOEL01000018
Bacillota
Lysinibacillus fusiformis TC-13 [FOEL]
67928
67851
-
Pro
TGG
[ENA]
¡û
>W1710564648
FOQQ01000009
Bacillota
Lysinibacillus fusiformis SG53 [FOQQ]
227673
227596
-
Pro
TGG
[ENA]
¡û
>W1710603187
FUYW01000007
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
176222
176146
-
Pro
TGG
[ENA]
¡û
>W1710603224
FUYW01000020
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
1296
1372
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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