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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148365 (27 seq.)
>W1710885918
LMXN01000015
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
142174
142248
+
Asn
GTT
[ENA]
¡û
>W1711021969
LQZQ01000009
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
164227
164153
-
Asn
GTT
[ENA]
¡û
>W1711356804
MDGQ01000004
Bacteroidota
Roseivirga misakiensis [MDGQ]
137245
137319
+
Asn
GTT
[ENA]
¡û
>W1711359976
MDJD01000006
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
115309
115233
-
Asn
GTT
[ENA]
¡û
>W1711359977
MDJD01000006
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
115013
114937
-
Asn
GTT
[ENA]
¡û
>W131179024
ARMB01000020
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
2483
2407
-
Asn
GTT
[ENA]
¡û
>W131233869
AUKI01000017
Bacteroidota
Salinimicrobium terrae DSM 17865 [AUKI]
193186
193110
-
Asn
GTT
[ENA]
¡û
>WENV180381226
OBOR01179901
[OBOR] marine metagenome; ENVO 00002227
204
278
+
Asn
GTT
[ENA]
¢þ
>WENV181323775
OFKZ01004437
[OFKZ] marine metagenome; sea ice
522
597
+
Asn
GTT
[ENA]
¢þ
>WENV182587181
OJHL01010760
[OJHL] seawater metagenome; Sea water
521
447
-
Asn
GTT
[ENA]
¢þ
>WENV182588096
OJHO01003352
[OJHO] seawater metagenome; Sea water
1844
1770
-
Asn
GTT
[ENA]
¢þ
>WENV170820552
MDSY01006611
[MDSY] marine metagenome; seawater
103
27
-
Asn
GTT
[ENA]
¢þ
>WENV170821674
MDSY01025981
[MDSY] marine metagenome; seawater
7
81
+
Asn
GTT
[ENA]
¢þ
>WENV170822776
MDSY01046286
[MDSY] marine metagenome; seawater
578
504
-
Asn
GTT
[ENA]
¢þ
>WENV170822838
MDSY01047340
[MDSY] marine metagenome; seawater
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV170822990
MDSY01049697
[MDSY] marine metagenome; seawater
109
33
-
Asn
GTT
[ENA]
¢þ
>WENV170989015
MWVY01058567
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
441
363
-
Asn
GTT
[ENA]
¢þ
>C181004343
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
1941355
1941429
+
Asn
GTT
-
¡û
>C181004344
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
1941474
1941548
+
Asn
GTT
-
¡û
>C181123910
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
1746220
1746294
+
Asn
GTT
-
¡û
>C181179072
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
4599290
4599216
-
Asn
GTT
-
¡û
>C191115325
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
1350091
1350165
+
Asn
GTT
-
¡û
>W1910695571
MDVN01000022
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
486773
486699
-
Asn
GTT
[ENA]
¡û
>W1810885316
QUNF01000024
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
47473
47399
-
Asn
GTT
[ENA]
¡û
>W1610747844
LMXN01000015
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
142174
142248
+
Asn
GTT
[ENA]
¡û
>W1710556700
FOKK01000005
Bacteroidota
Algoriphagus aquimarinus [FOKK]
272417
272343
-
Asn
GTT
[ENA]
¡û
>W1710558031
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
191378
191302
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK