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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148379 (102 seq.)
>W131104387
APCP01000007
Bacillota
Ligilactobacillus pobuzihii E100301 [APCP]
372
447
+
Pro
CGG
[ENA]
¡û
>W1711092319
LTDX01000018
Bacillota
Lactobacillus acetotolerans [LTDX]
31219
31146
-
Pro
CGG
[ENA]
¡û
>W131226395
AUEI01000006
Bacillota
Lactobacillus psittaci DSM 15354 [AUEI]
45646
45721
+
Pro
CGG
[ENA]
¡û
>W1711372528
MDTN01000064
Bacillota
Lactobacillus jensenii [MDTN]
17850
17925
+
Pro
CGG
[ENA]
¡û
>C171084492
CP018809
Bacillota
Lactobacillus jensenii SNUV360 [CP018809]
384617
384692
+
Pro
CGG
-
¡û
>C171129762
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1916558
1916485
-
Pro
CGG
-
¡û
>W131144787
AQFR01000131
Bacillota
Lactobacillus intestinalis ASF360 [AQFR]
48150
48077
-
Pro
CGG
[ENA]
¡û
>WENV180845087
ODKS01000003
[ODKS] human metagenome; G_DNA_Posterior fornix
70093
70018
-
Pro
CGG
[ENA]
¢þ
>WENV180887065
ODMF01000008
[ODMF] human metagenome; G_DNA_Posterior fornix
17685
17610
-
Pro
CGG
[ENA]
¢þ
>WENV180912560
ODSK01000004
[ODSK] human metagenome; G_DNA_Posterior fornix
35430
35355
-
Pro
CGG
[ENA]
¢þ
>W141094689
AVCU01000045
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
36826
36751
-
Pro
CGG
[ENA]
¡û
>WENV181131305
OEGB01000006
[OEGB] human metagenome; G_DNA_Posterior fornix
70094
70019
-
Pro
CGG
[ENA]
¢þ
>WENV181262299
OFFY01002937
[OFFY] mouse gut metagenome; faeces
87
160
+
Pro
CGG
[ENA]
¢þ
>WENV181272800
OFGG01072183
[OFGG] mouse gut metagenome; faeces
441
368
-
Pro
CGG
[ENA]
¢þ
>WENV181282105
OFGP01002469
[OFGP] mouse gut metagenome; faeces
29
102
+
Pro
CGG
[ENA]
¢þ
>WENV181286972
OFGX01000278
[OFGX] mouse gut metagenome; faeces
12743
12670
-
Pro
CGG
[ENA]
¢þ
>WENV181289436
OFHA01000074
[OFHA] mouse gut metagenome; faeces
35858
35931
+
Pro
CGG
[ENA]
¢þ
>WENV183511678
OMJG01001807
[OMJG] food metagenome; Cotija cheese
145
218
+
Pro
CGG
[ENA]
¢þ
>C181178952
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
1487118
1487045
-
Pro
CGG
-
¡û
>C181179900
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
1397590
1397517
-
Pro
CGG
-
¡û
>W09110912
ABWG01000029
Bacillota
Lactobacillus jensenii 1153 [ABWG]
124143
124218
+
Pro
CGG
[ENA]
¡û
>W09122994
ACGQ01000026
Bacillota
Lactobacillus jensenii JV-V16 [ACGQ]
70042
69967
-
Pro
CGG
[ENA]
¡û
>W09123254
ACGU01000110
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
56799
56872
+
Pro
CGG
[ENA]
¡û
>W09127615
ACLD01000057
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
56799
56872
+
Pro
CGG
[ENA]
¡û
>W09133296
ACOY01000015
Bacillota
Lactobacillus jensenii 269-3 [ACOY]
20891
20966
+
Pro
CGG
[ENA]
¡û
>W1910067639
BFFP01000033
Bacillota
Ligilactobacillus salitolerans YK43 [BFFP]
30681
30606
-
Pro
CGG
[ENA]
¡û
>W1911160208
NPNG01000001
Bacillota
Lactobacillus bombicola H70-3 [NPNG]
343809
343882
+
Pro
CGG
[ENA]
¡û
>W1911160270
NPNH01000003
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
130155
130230
+
Pro
CGG
[ENA]
¡û
>W1911595773
PNGP01000001
Bacillota
Lactobacillus iners UMB0033 [PNGP]
584205
584130
-
Pro
CGG
[ENA]
¡û
>W1911595816
PNGQ01000001
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
129951
130026
+
Pro
CGG
[ENA]
¡û
>W1911702438
QOCT01000004
Bacillota
Lactobacillus bombicola L5-31 [QOCT]
57738
57665
-
Pro
CGG
[ENA]
¡û
>W1911702528
QOCU01000006
Bacillota
Lactobacillus bombicola BI-4G [QOCU]
70346
70273
-
Pro
CGG
[ENA]
¡û
>W1911702569
QOCV01000008
Bacillota
Lactobacillus bombicola OCC3 [QOCV]
136590
136517
-
Pro
CGG
[ENA]
¡û
>W1810005923
BFBY01000001
Bacillota
Lactobacillus rodentium DSM 24759 [BFBY]
109800
109875
+
Pro
CGG
[ENA]
¡û
>W1810190578
PKJY01000015
Bacillota
Lactobacillus jensenii UMB0077 [PKJY]
35476
35401
-
Pro
CGG
[ENA]
¡û
>W1810603478
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
1172009
1171936
-
Pro
CGG
[ENA]
¡û
>C151003244
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
348905
348978
+
Pro
CGG
[Ensembl]
¡û
>C151053182
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
1445218
1445142
-
Pro
CGG
[Ensembl]
¡û
>W10101959
ACOF01000037
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
72244
72319
+
Pro
CGG
[ENA]
¡û
>W10103232
ACQD01000032
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
6532
6607
+
Pro
CGG
[ENA]
¡û
>W10103497
ACQN01000026
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
76290
76215
-
Pro
CGG
[ENA]
¡û
>W10112262
ADEX01000146
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
17426
17501
+
Pro
CGG
[ENA]
¡û
>W10112297
ADEX01000201
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
12562
12487
-
Pro
CGG
[ENA]
¡û
>W11102115
ACOF01000037
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
72244
72319
+
Pro
CGG
[ENA]
¡û
>W11103388
ACQD01000032
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
6532
6607
+
Pro
CGG
[ENA]
¡û
>W11103653
ACQN01000026
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
76290
76215
-
Pro
CGG
[ENA]
¡û
>W11115483
ADEX01000146
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
17426
17501
+
Pro
CGG
[ENA]
¡û
>W11115518
ADEX01000201
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
12562
12487
-
Pro
CGG
[ENA]
¡û
>W1511347219
JRJB01000014
Bacillota
Lactobacillus sp. wkB10 [JRJB]
3326
3253
-
Pro
CGG
[ENA]
¡û
>W1511501592
JXBY01000024
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
788
715
-
Pro
CGG
[ENA]
¡û
>W11137496
AEHO01000007
Bacillota
Lactobacillus iners LactinV 09V1-c [AEHO]
142362
142287
-
Pro
CGG
[ENA]
¡û
>W1511505356
JXJR01000011
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
75086
75010
-
Pro
CGG
[ENA]
¡û
>W1511505492
JXLH01000018
Bacillota
Lactobacillus kimbladii Hma2 [JXLH]
1804
1731
-
Pro
CGG
[ENA]
¡û
>W1511505542
JXLI01000012
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
25709
25636
-
Pro
CGG
[ENA]
¡û
>W11185069
BACS01000436
Bacillota
Ligilactobacillus acidipiscis KCTC 13900 [BACS]
82
155
+
Pro
CGG
[ENA]
¡û
>W1610031350
AYYS01000013
Bacillota
Amylolactobacillus amylophilus DSM 20533 = JCM 1125 [AYYS]
174866
174793
-
Pro
CGG
[ENA]
¡û
>W1610031429
AYYU01000016
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
35407
35332
-
Pro
CGG
[ENA]
¡û
>W1610031443
AYYU01000092
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
75
150
+
Pro
CGG
[ENA]
¡û
>W1610031770
AYZC01000001
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
109067
108994
-
Pro
CGG
[ENA]
¡û
>W1610032766
AZCL01000009
Bacillota
Ligilactobacillus pobuzihii E100301 = KCTC 13174 [AZCL]
185
260
+
Pro
CGG
[ENA]
¡û
>W1610036159
AZFB01000046
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
75
150
+
Pro
CGG
[ENA]
¡û
>W1610036488
AZFI01000047
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
673
746
+
Pro
CGG
[ENA]
¡û
>W1610036564
AZFJ01000046
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [AZFJ]
77844
77770
-
Pro
CGG
[ENA]
¡û
>W1610036794
AZFO01000003
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
54834
54761
-
Pro
CGG
[ENA]
¡û
>W1610038074
AZGN01000009
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
33660
33587
-
Pro
CGG
[ENA]
¡û
>W1610039479
AZNM01000031
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
35429
35354
-
Pro
CGG
[ENA]
¡û
>W1610039545
AZNN01000106
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
35453
35378
-
Pro
CGG
[ENA]
¡û
>W1610039588
AZNO01000037
Bacillota
Lactobacillus jensenii IM11 [AZNO]
34310
34385
+
Pro
CGG
[ENA]
¡û
>W1610039625
AZRC01000013
Bacillota
Lactobacillus jensenii IM59 [AZRC]
88855
88780
-
Pro
CGG
[ENA]
¡û
>W1610039668
AZRD01000002
Bacillota
Lactobacillus jensenii IM1 [AZRD]
34156
34231
+
Pro
CGG
[ENA]
¡û
>W1610039745
AZRE01000042
Bacillota
Lactobacillus jensenii IM3 [AZRE]
72289
72364
+
Pro
CGG
[ENA]
¡û
>W1610044165
BBAI01000006
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
759
833
+
Pro
CGG
[ENA]
¡û
>W1610045723
BBBU01000001
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
109227
109154
-
Pro
CGG
[ENA]
¡û
>W1610049110
BBER01000010
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
757
831
+
Pro
CGG
[ENA]
¡û
>W1610073190
BCVS01000142
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
3972
3898
-
Pro
CGG
[ENA]
¡û
>W1610528665
JQBK01000268
Bacillota
Ligilactobacillus acidipiscis [JQBK]
159
232
+
Pro
CGG
[ENA]
¡û
>W1610530005
JQCN01000051
Bacillota
Ligilactobacillus pobuzihii [JQCN]
736
811
+
Pro
CGG
[ENA]
¡û
>W1610926357
LTDX01000018
Bacillota
Lactobacillus acetotolerans [LTDX]
31219
31146
-
Pro
CGG
[ENA]
¡û
>W1710028302
AYYS01000013
Bacillota
Amylolactobacillus amylophilus DSM 20533 = JCM 1125 [AYYS]
174866
174793
-
Pro
CGG
[ENA]
¡û
>W1710028356
AYYU01000016
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
35407
35332
-
Pro
CGG
[ENA]
¡û
>W1710028370
AYYU01000092
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
75
150
+
Pro
CGG
[ENA]
¡û
>W1710028697
AYZC01000001
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
109067
108994
-
Pro
CGG
[ENA]
¡û
>W1710030097
AZCL01000009
Bacillota
Ligilactobacillus pobuzihii E100301 = KCTC 13174 [AZCL]
185
260
+
Pro
CGG
[ENA]
¡û
>W1710033198
AZFB01000046
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
75
150
+
Pro
CGG
[ENA]
¡û
>W1710033527
AZFI01000047
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
673
746
+
Pro
CGG
[ENA]
¡û
>W1710033603
AZFJ01000046
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [AZFJ]
77844
77770
-
Pro
CGG
[ENA]
¡û
>W1710033833
AZFO01000003
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
54834
54761
-
Pro
CGG
[ENA]
¡û
>W1710035066
AZGN01000009
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
33660
33587
-
Pro
CGG
[ENA]
¡û
>W1710036624
AZNM01000031
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
35429
35354
-
Pro
CGG
[ENA]
¡û
>W1710036690
AZNN01000106
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
35453
35378
-
Pro
CGG
[ENA]
¡û
>W1710036733
AZNO01000037
Bacillota
Lactobacillus jensenii IM11 [AZNO]
34310
34385
+
Pro
CGG
[ENA]
¡û
>W1710036770
AZRC01000013
Bacillota
Lactobacillus jensenii IM59 [AZRC]
88855
88780
-
Pro
CGG
[ENA]
¡û
>W1710036813
AZRD01000002
Bacillota
Lactobacillus jensenii IM1 [AZRD]
34156
34231
+
Pro
CGG
[ENA]
¡û
>W1710036890
AZRE01000042
Bacillota
Lactobacillus jensenii IM3 [AZRE]
72289
72364
+
Pro
CGG
[ENA]
¡û
>W1710041325
BBAI01000006
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
759
833
+
Pro
CGG
[ENA]
¡û
>W1710042564
BBBU01000001
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
109227
109154
-
Pro
CGG
[ENA]
¡û
>W1710045582
BBER01000010
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
757
831
+
Pro
CGG
[ENA]
¡û
>W1710070308
BCVS01000142
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
3972
3898
-
Pro
CGG
[ENA]
¡û
>W1710087224
BDQH01000186
Bacillota
Ligilactobacillus acidipiscis [BDQH]
11563
11490
-
Pro
CGG
[ENA]
¡û
>W1710559276
FOMN01000002
Bacillota
Lactobacillus bombicola [FOMN]
81004
80931
-
Pro
CGG
[ENA]
¡û
>W1710630255
JQBK01000268
Bacillota
Ligilactobacillus acidipiscis [JQBK]
159
232
+
Pro
CGG
[ENA]
¡û
>W1710631595
JQCN01000051
Bacillota
Ligilactobacillus pobuzihii [JQCN]
736
811
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK