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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148401 (36 seq.)
>W1710893515
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
335959
335883
-
Pro
TGG
[ENA]
¡û
>W1711179394
LWHQ01000001
Alphaproteobacteria
Methylobacterium platani [LWHQ]
37269
37345
+
Pro
TGG
[ENA]
¡û
>W131163794
ARAA01000070
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
345573
345649
+
Pro
TGG
[ENA]
¡û
>w026458
ABAY01000011
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
73577
73504
-
Pro
TGG
[ENA]
¡û
>WENV181167483
OEIU01034467
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
516
440
-
Pro
TGG
[ENA]
¢þ
>W08006173
ABIP01000096
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
11679
11606
-
Pro
TGG
[ENA]
¡û
>C08006473
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
522396
522323
-
Pro
TGG
[Ensembl]
¡û
>WENV170709012
LNFM01000069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
94874
94950
+
Pro
TGG
[ENA]
¢þ
>WENV170710424
LNFM01001722
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
46120
46044
-
Pro
TGG
[ENA]
¢þ
>WENV170821646
MDSY01025573
[MDSY] marine metagenome; seawater
6728
6804
+
Pro
TGG
[ENA]
¢þ
>WENV170824972
MDSY01085444
[MDSY] marine metagenome; seawater
377
301
-
Pro
TGG
[ENA]
¢þ
>WENV170922253
MDTG01028088
[MDTG] marine metagenome; seawater
7456
7532
+
Pro
TGG
[ENA]
¢þ
>C181180091
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
1897258
1897334
+
Pro
TGG
-
¡û
>C181180202
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4693418
4693494
+
Pro
TGG
-
¡û
>C09107821
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1744596
1744672
+
Pro
TGG
[Ensembl]
¡û
>W1911653499
QDFX01000002
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
81623
81699
+
Pro
TGG
[ENA]
¡û
>W1911708568
QOWC01000102
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
8263
8339
+
Pro
TGG
[ENA]
¡û
>W1810079873
PELK01000901
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
1001
925
-
Pro
TGG
[ENA]
¡û
>W1511400888
JTHF01000072
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
5583
5507
-
Pro
TGG
[ENA]
¡û
>W1511400925
JTHG01000026
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
46251
46327
+
Pro
TGG
[ENA]
¡û
>W1511507878
JXOD01000073
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
32880
32956
+
Pro
TGG
[ENA]
¡û
>W1511563311
LABY01000114
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
9929
9853
-
Pro
TGG
[ENA]
¡û
>C161001169
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
5299331
5299255
-
Pro
TGG
[Ensembl]
¡û
>W1610047398
BBDG01000336
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
497
421
-
Pro
TGG
[ENA]
¡û
>W1610590421
LDRL01000025
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
21998
22074
+
Pro
TGG
[ENA]
¡û
>W1610590481
LDRM01000021
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
11608
11684
+
Pro
TGG
[ENA]
¡û
>W1610590588
LDRN01000151
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
4874
4798
-
Pro
TGG
[ENA]
¡û
>W1610753781
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
335959
335883
-
Pro
TGG
[ENA]
¡û
>W1610987295
LWHQ01000001
Alphaproteobacteria
Methylobacterium platani [LWHQ]
37269
37345
+
Pro
TGG
[ENA]
¡û
>W1710044003
BBDG01000336
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
497
421
-
Pro
TGG
[ENA]
¡û
>W1710548833
FOEB01000013
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
68278
68354
+
Pro
TGG
[ENA]
¡û
>W1710560667
FONO01000007
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
62367
62443
+
Pro
TGG
[ENA]
¡û
>W1710579083
FPCB01000049
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
12736
12812
+
Pro
TGG
[ENA]
¡û
>W1710709701
LDRL01000025
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
21998
22074
+
Pro
TGG
[ENA]
¡û
>W1710709761
LDRM01000021
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
11608
11684
+
Pro
TGG
[ENA]
¡û
>W1710709868
LDRN01000151
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
4874
4798
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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