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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148446 (58 seq.)
>W1710778614
LJDB01000076
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
160
235
+
Arg
TCT
[ENA]
¡û
>W1710784739
LJHC01000103
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
22542
22467
-
Arg
TCT
[ENA]
¡û
>W1710784750
LJHD01000101
Bacillota
Epulopiscium sp. SCG-D08WGA-EpuloA1 [LJHD]
18
92
+
Arg
TCT
[ENA]
¡û
>W1710784755
LJHD01000183
Bacillota
Epulopiscium sp. SCG-D08WGA-EpuloA1 [LJHD]
12729
12654
-
Arg
TCT
[ENA]
¡û
>W1710784766
LJHE01000059
Bacillota
Epulopiscium sp. SCG-C07WGA-EpuloA2 [LJHE]
13739
13814
+
Arg
TCT
[ENA]
¡û
>W1710784790
LJHF01000019
Bacillota
Epulopiscium sp. SCG-B10WGA-EpuloA2 [LJHF]
1828
1753
-
Arg
TCT
[ENA]
¡û
>W1710784802
LJHG01000240
Bacillota
Epulopiscium sp. SCG-B10WGA-EpuloB [LJHG]
4775
4849
+
Arg
TCT
[ENA]
¡û
>W1710784809
LJHH01000130
Bacillota
Epulopiscium sp. SCG-C06WGA-EpuloA1 [LJHH]
153
228
+
Arg
TCT
[ENA]
¡û
>WENV180445825
OBXA01029957
[OBXA] human gut metagenome; faeces
111
36
-
Arg
TCT
[ENA]
¢þ
>WENV180446593
OBXC01000389
[OBXC] human gut metagenome; faeces
12779
12854
+
Arg
TCT
[ENA]
¢þ
>WENV180446599
OBXC01000389
[OBXC] human gut metagenome; faeces
13317
13391
+
Arg
TCT
[ENA]
¢þ
>WENV180446952
OBXC01004716
[OBXC] human gut metagenome; faeces
1837
1762
-
Arg
TCT
[ENA]
¢þ
>WENV180455074
OBXO01000355
[OBXO] human gut metagenome; faeces
41973
41899
-
Arg
TCT
[ENA]
¢þ
>WENV180455294
OBXO01001070
[OBXO] human gut metagenome; faeces
12297
12222
-
Arg
TCT
[ENA]
¢þ
>WENV180455390
OBXO01002633
[OBXO] human gut metagenome; faeces
319
244
-
Arg
TCT
[ENA]
¢þ
>WENV182409558
OIFJ01000017
[OIFJ] human gut metagenome; stool
67588
67663
+
Arg
TCT
[ENA]
¢þ
>WENV182409564
OIFJ01000017
[OIFJ] human gut metagenome; stool
68126
68200
+
Arg
TCT
[ENA]
¢þ
>WENV182409819
OIFJ01000400
[OIFJ] human gut metagenome; stool
2508
2583
+
Arg
TCT
[ENA]
¢þ
>WENV182961605
OKWL01000094
[OKWL] human gut metagenome; stool
4
78
+
Arg
TCT
[ENA]
¢þ
>WENV182961690
OKWL01000164
[OKWL] human gut metagenome; stool
75
-1
-
Arg
TCT
[ENA]
¢þ
>WENV182961862
OKWL01000980
[OKWL] human gut metagenome; stool
3
78
+
Arg
TCT
[ENA]
¢þ
>WENV182961878
OKWL01001269
[OKWL] human gut metagenome; stool
2508
2583
+
Arg
TCT
[ENA]
¢þ
>WENV182965815
OKWT01000293
[OKWT] human gut metagenome; stool
10674
10599
-
Arg
TCT
[ENA]
¢þ
>WENV182965844
OKWT01000501
[OKWT] human gut metagenome; stool
4563
4489
-
Arg
TCT
[ENA]
¢þ
>WENV182965863
OKWT01000730
[OKWT] human gut metagenome; stool
75
-1
-
Arg
TCT
[ENA]
¢þ
>WENV183500584
OMGQ01035245
[OMGQ] human gut metagenome; human gut
4
79
+
Arg
TCT
[ENA]
¢þ
>WENV183589728
OOCW01003919
[OOCW] human gut metagenome; human gut
2471
2396
-
Arg
TCT
[ENA]
¢þ
>WENV170784773
MDSO01000001
[MDSO] gut metagenome; Stomach gut content
66316
66391
+
Arg
TCT
[ENA]
¢þ
>WENV170784823
MDSO01000383
[MDSO] gut metagenome; Stomach gut content
5122
5047
-
Arg
TCT
[ENA]
¢þ
>WENV170784853
MDSO01001236
[MDSO] gut metagenome; Stomach gut content
1948
1874
-
Arg
TCT
[ENA]
¢þ
>WENV170784892
MDSO01032552
[MDSO] gut metagenome; Stomach gut content
162
87
-
Arg
TCT
[ENA]
¢þ
>WENV170785040
MDSP01000001
[MDSP] gut metagenome; Stomach gut content
70746
70671
-
Arg
TCT
[ENA]
¢þ
>WENV170785046
MDSP01000001
[MDSP] gut metagenome; Stomach gut content
70163
70089
-
Arg
TCT
[ENA]
¢þ
>C191128882
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
818186
818261
+
Arg
TCT
-
¡û
>C191128915
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1893337
1893412
+
Arg
TCT
-
¡û
>C191128921
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1893903
1893978
+
Arg
TCT
-
¡û
>W1910217718
FMMP01000028
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
278453
278378
-
Arg
TCT
[ENA]
¡û
>W1910217724
FMMP01000028
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
277921
277846
-
Arg
TCT
[ENA]
¡û
>W1810071088
PEDL01000011
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
41648
41573
-
Arg
TCT
[ENA]
¡û
>W1810071094
PEDL01000011
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
41118
41043
-
Arg
TCT
[ENA]
¡û
>W10118873
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
49313
49388
+
Arg
TCT
[ENA]
¡û
>W10118879
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
49879
49954
+
Arg
TCT
[ENA]
¡û
>W10118885
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1097
1172
+
Arg
TCT
[ENA]
¡û
>C11105526
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
157305
157380
+
Arg
TCT
[Ensembl]
¡û
>C11105558
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1283325
1283400
+
Arg
TCT
[Ensembl]
¡û
>C11105564
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1283891
1283966
+
Arg
TCT
[Ensembl]
¡û
>W1510725205
CXYW01000007
Bacillota
Niameybacter massiliensis mt14 [CXYW]
15522
15447
-
Arg
TCT
[ENA]
¡û
>W1510725276
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1595262
1595187
-
Arg
TCT
[ENA]
¡û
>W1510725282
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1594724
1594648
-
Arg
TCT
[ENA]
¡û
>W11125045
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
49313
49388
+
Arg
TCT
[ENA]
¡û
>W11125051
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
49879
49954
+
Arg
TCT
[ENA]
¡û
>W11125057
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1097
1172
+
Arg
TCT
[ENA]
¡û
>W1610046295
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
146578
146503
-
Arg
TCT
[ENA]
¡û
>W1610046301
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
145982
145907
-
Arg
TCT
[ENA]
¡û
>W1610046368
BBCG01000163
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
837
762
-
Arg
TCT
[ENA]
¡û
>W1710043091
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
146578
146503
-
Arg
TCT
[ENA]
¡û
>W1710043097
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
145982
145907
-
Arg
TCT
[ENA]
¡û
>W1710043164
BBCG01000163
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
837
762
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK