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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148449 (71 seq.)
>W1710778592
LJDB01000043
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
150228
150153
-
Asp
GTC
[ENA]
¡û
>W1710778600
LJDB01000043
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
106279
106204
-
Asp
GTC
[ENA]
¡û
>W1710778615
LJDB01000076
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
881
956
+
Asp
GTC
[ENA]
¡û
>W1710784732
LJHC01000101
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
30681
30606
-
Asp
GTC
[ENA]
¡û
>W1710784740
LJHC01000103
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
21821
21746
-
Asp
GTC
[ENA]
¡û
>W1710784746
LJHC01000143
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
99244
99169
-
Asp
GTC
[ENA]
¡û
>W1710784756
LJHD01000183
Bacillota
Epulopiscium sp. SCG-D08WGA-EpuloA1 [LJHD]
11950
11875
-
Asp
GTC
[ENA]
¡û
>W1710784810
LJHH01000130
Bacillota
Epulopiscium sp. SCG-C06WGA-EpuloA1 [LJHH]
309
384
+
Asp
GTC
[ENA]
¡û
>WENV180197999
OBAB01053115
[OBAB] human gut metagenome; faeces
218
291
+
Asp
GTC
[ENA]
¢þ
>WENV180445779
OBXA01025247
[OBXA] human gut metagenome; faeces
819
744
-
Asp
GTC
[ENA]
¢þ
>WENV180446795
OBXC01001335
[OBXC] human gut metagenome; faeces
10488
10414
-
Asp
GTC
[ENA]
¢þ
>WENV180447361
OBXC01090559
[OBXC] human gut metagenome; faeces
1
74
+
Asp
GTC
[ENA]
¢þ
>WENV180455295
OBXO01001070
[OBXO] human gut metagenome; faeces
10545
10470
-
Asp
GTC
[ENA]
¢þ
>WENV180455626
OBXO01015395
[OBXO] human gut metagenome; faeces
351
424
+
Asp
GTC
[ENA]
¢þ
>WENV182409669
OIFJ01000091
[OIFJ] human gut metagenome; stool
79810
79735
-
Asp
GTC
[ENA]
¢þ
>WENV182409675
OIFJ01000091
[OIFJ] human gut metagenome; stool
78691
78616
-
Asp
GTC
[ENA]
¢þ
>WENV182409820
OIFJ01000400
[OIFJ] human gut metagenome; stool
5874
5948
+
Asp
GTC
[ENA]
¢þ
>WENV182452376
OIMD01009085
[OIMD] human gut metagenome; human gut
292
367
+
Asp
GTC
[ENA]
¢þ
>WENV182961540
OKWL01000044
[OKWL] human gut metagenome; stool
97
172
+
Asp
GTC
[ENA]
¢þ
>WENV182961863
OKWL01000980
[OKWL] human gut metagenome; stool
3369
3443
+
Asp
GTC
[ENA]
¢þ
>WENV182962543
OKWN01003596
[OKWN] human gut metagenome; stool
1201
1276
+
Asp
GTC
[ENA]
¢þ
>WENV182965816
OKWT01000293
[OKWT] human gut metagenome; stool
7308
7234
-
Asp
GTC
[ENA]
¢þ
>WENV182965831
OKWT01000389
[OKWT] human gut metagenome; stool
135
210
+
Asp
GTC
[ENA]
¢þ
>WENV170784814
MDSO01000168
[MDSO] gut metagenome; Stomach gut content
6026
6101
+
Asp
GTC
[ENA]
¢þ
>WENV170784824
MDSO01000383
[MDSO] gut metagenome; Stomach gut content
4343
4268
-
Asp
GTC
[ENA]
¢þ
>WENV170784911
MDSO01056706
[MDSO] gut metagenome; Stomach gut content
822
747
-
Asp
GTC
[ENA]
¢þ
>WENV170785008
MDSO01164850
[MDSO] gut metagenome; Stomach gut content
332
407
+
Asp
GTC
[ENA]
¢þ
>WENV170785050
MDSP01000001
[MDSP] gut metagenome; Stomach gut content
21489
21414
-
Asp
GTC
[ENA]
¢þ
>WENV170785054
MDSP01000025
[MDSP] gut metagenome; Stomach gut content
35352
35277
-
Asp
GTC
[ENA]
¢þ
>WENV170785065
MDSP01000029
[MDSP] gut metagenome; Stomach gut content
655
730
+
Asp
GTC
[ENA]
¢þ
>WENV170785071
MDSP01000032
[MDSP] gut metagenome; Stomach gut content
12221
12148
-
Asp
GTC
[ENA]
¢þ
>WENV170785086
MDSP01000082
[MDSP] gut metagenome; Stomach gut content
893
968
+
Asp
GTC
[ENA]
¢þ
>WENV170785092
MDSP01000121
[MDSP] gut metagenome; Stomach gut content
16925
16850
-
Asp
GTC
[ENA]
¢þ
>WENV170785113
MDSP01000166
[MDSP] gut metagenome; Stomach gut content
4415
4339
-
Asp
GTC
[ENA]
¢þ
>C191128864
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
672423
672498
+
Asp
GTC
-
¡û
>C191128887
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
830945
831020
+
Asp
GTC
-
¡û
>C191128943
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4369742
4369669
-
Asp
GTC
-
¡û
>C191128955
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3959524
3959451
-
Asp
GTC
-
¡û
>W1910217658
FMMP01000007
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
376170
376095
-
Asp
GTC
[ENA]
¡û
>W1910217692
FMMP01000016
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
196307
196232
-
Asp
GTC
[ENA]
¡û
>W1910217704
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
722
795
+
Asp
GTC
[ENA]
¡û
>W1910217709
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
1915
1988
+
Asp
GTC
[ENA]
¡û
>W1810071069
PEDL01000001
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
26670
26744
+
Asp
GTC
[ENA]
¡û
>W1810071103
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
89783
89709
-
Asp
GTC
[ENA]
¡û
>W1810071117
PEDL01000030
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
352
427
+
Asp
GTC
[ENA]
¡û
>W1810071128
PEDL01000041
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
10218
10143
-
Asp
GTC
[ENA]
¡û
>W10118890
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
16990
17065
+
Asp
GTC
[ENA]
¡û
>W10118918
ADVF01000053
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
551
626
+
Asp
GTC
[ENA]
¡û
>W10118933
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10205
10132
-
Asp
GTC
[ENA]
¡û
>W10118952
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
475
548
+
Asp
GTC
[ENA]
¡û
>C11105508
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
15469
15544
+
Asp
GTC
[Ensembl]
¡û
>C11105531
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
173200
173275
+
Asp
GTC
[Ensembl]
¡û
>C11105589
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3620190
3620117
-
Asp
GTC
[Ensembl]
¡û
>C11105601
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3252813
3252740
-
Asp
GTC
[Ensembl]
¡û
>W1510725184
CXYW01000002
Bacillota
Niameybacter massiliensis mt14 [CXYW]
16841
16766
-
Asp
GTC
[ENA]
¡û
>W1510725192
CXYW01000005
Bacillota
Niameybacter massiliensis mt14 [CXYW]
156
231
+
Asp
GTC
[ENA]
¡û
>W1510725206
CXYW01000007
Bacillota
Niameybacter massiliensis mt14 [CXYW]
11036
10962
-
Asp
GTC
[ENA]
¡û
>W1510725249
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2721845
2721770
-
Asp
GTC
[ENA]
¡û
>W1510725255
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2718334
2718259
-
Asp
GTC
[ENA]
¡û
>W1510725268
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1793797
1793724
-
Asp
GTC
[ENA]
¡û
>W1510725292
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
381963
381888
-
Asp
GTC
[ENA]
¡û
>W11125062
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
16990
17065
+
Asp
GTC
[ENA]
¡û
>W11125090
ADVF01000053
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
551
626
+
Asp
GTC
[ENA]
¡û
>W11125105
ADVF01000064
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
10205
10132
-
Asp
GTC
[ENA]
¡û
>W11125124
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
475
548
+
Asp
GTC
[ENA]
¡û
>W1610046337
BBCG01000077
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
11979
11904
-
Asp
GTC
[ENA]
¡û
>W1610046351
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
318
245
-
Asp
GTC
[ENA]
¡û
>W1610046371
BBCG01000169
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
280
354
+
Asp
GTC
[ENA]
¡û
>W1710043133
BBCG01000077
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
11979
11904
-
Asp
GTC
[ENA]
¡û
>W1710043147
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
318
245
-
Asp
GTC
[ENA]
¡û
>W1710043167
BBCG01000169
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
280
354
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK