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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148476 (96 seq.)
>W1711095172
LTGO01000043
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
75847
75923
+
Pro
GGG
[ENA]
¡û
>W1711096607
LTHX01000046
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
20735
20659
-
Pro
GGG
[ENA]
¡û
>W1711102637
LTNW01000063
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
22291
22215
-
Pro
GGG
[ENA]
¡û
>W1711103667
LTOW01000116
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
20732
20656
-
Pro
GGG
[ENA]
¡û
>W1711105917
LTRH01000029
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
20921
20845
-
Pro
GGG
[ENA]
¡û
>W1711106564
LTRY01000049
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
23402
23326
-
Pro
GGG
[ENA]
¡û
>W1711106665
LTSB01000048
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
9729
9653
-
Pro
GGG
[ENA]
¡û
>W1711107194
LTSO01000025
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
199945
200021
+
Pro
GGG
[ENA]
¡û
>W1711108819
LTUC01000038
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
12686
12762
+
Pro
GGG
[ENA]
¡û
>W131160890
AQXC01000001
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
94946
95022
+
Pro
GGG
[ENA]
¡û
>W1711114747
LTZO01000055
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
229933
230009
+
Pro
GGG
[ENA]
¡û
>W1711185891
LWNT01000078
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
20805
20729
-
Pro
GGG
[ENA]
¡û
>W1711185898
LWNU01000005
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
163759
163835
+
Pro
GGG
[ENA]
¡û
>W1711186525
LWOH01000026
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
23779
23703
-
Pro
GGG
[ENA]
¡û
>W1711186793
LWOM01000076
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
197564
197640
+
Pro
GGG
[ENA]
¡û
>W1711186920
LWOP01000045
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
173131
173207
+
Pro
GGG
[ENA]
¡û
>W1711186963
LWOR01000018
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
177284
177360
+
Pro
GGG
[ENA]
¡û
>W1711208389
LXGG01000007
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
6900
6976
+
Pro
GGG
[ENA]
¡û
>W1711482560
MKAX01000723
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
29962
29886
-
Pro
GGG
[ENA]
¡û
>W1711510251
MLAL01000016
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
419921
419997
+
Pro
GGG
[ENA]
¡û
>W1711511691
MLCQ01000017
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
21499
21423
-
Pro
GGG
[ENA]
¡û
>W1711511720
MLCR01000005
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
450589
450665
+
Pro
GGG
[ENA]
¡û
>W1711517366
MLJM01000012
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
12939
13015
+
Pro
GGG
[ENA]
¡û
>C171064720
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1181950
1182026
+
Pro
GGG
-
¡û
>W131164493
ARAV01000001
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
28126
28050
-
Pro
GGG
[ENA]
¡û
>W131169235
AREP01000004
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
5777
5701
-
Pro
GGG
[ENA]
¡û
>W131251659
CAVS020000028
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
2935
3011
+
Pro
GGG
[ENA]
¡û
>WENV180228663
OBCD01004265
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
235
161
-
Pro
GGG
[ENA]
¢þ
>WENV180916306
ODTC01002542
[ODTC] human metagenome; G_DNA_Anterior nares
340
414
+
Pro
GGG
[ENA]
¢þ
>WENV180917939
ODTE01013365
[ODTE] human metagenome; G_DNA_Anterior nares
100
26
-
Pro
GGG
[ENA]
¢þ
>WENV181131551
OEGC01004098
[OEGC] human metagenome; G_DNA_Anterior nares
449
375
-
Pro
GGG
[ENA]
¢þ
>WENV181212257
OFBN01001821
[OFBN] metagenome; hydrothermal vent
82
156
+
Pro
GGG
[ENA]
¢þ
>WENV181212341
OFBO01002385
[OFBO] metagenome; hydrothermal vent
532
458
-
Pro
GGG
[ENA]
¢þ
>WENV181212401
OFBP01000896
[OFBP] metagenome; hydrothermal vent
722
648
-
Pro
GGG
[ENA]
¢þ
>WENV181212484
OFBQ01000925
[OFBQ] metagenome; hydrothermal vent
672
746
+
Pro
GGG
[ENA]
¢þ
>WENV181212570
OFBR01001663
[OFBR] metagenome; hydrothermal vent
121
195
+
Pro
GGG
[ENA]
¢þ
>WENV181212655
OFBS01002562
[OFBS] metagenome; hydrothermal vent
532
458
-
Pro
GGG
[ENA]
¢þ
>WENV181212730
OFBT01001694
[OFBT] metagenome; hydrothermal vent
722
648
-
Pro
GGG
[ENA]
¢þ
>W141155086
AXLR01000005
Actinomycetota
Corynebacterium sp. KPL1989 [AXLR]
265947
265871
-
Pro
GGG
[ENA]
¡û
>W141259194
CBYN010000122
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
527
603
+
Pro
GGG
[ENA]
¡û
>WENV182629124
OJKR01006957
[OJKR] metagenome; surface
527
453
-
Pro
GGG
[ENA]
¢þ
>WENV182635924
OJKZ01000022
[OJKZ] metagenome; surface
23970
23896
-
Pro
GGG
[ENA]
¢þ
>WENV182635974
OJKZ01000060
[OJKZ] metagenome; surface
22369
22295
-
Pro
GGG
[ENA]
¢þ
>WENV182636031
OJKZ01000131
[OJKZ] metagenome; surface
4659
4585
-
Pro
GGG
[ENA]
¢þ
>WENV182641115
OJLE01008203
[OJLE] metagenome; surface
531
605
+
Pro
GGG
[ENA]
¢þ
>WENV182641845
OJLK01003112
[OJLK] metagenome; surface
437
363
-
Pro
GGG
[ENA]
¢þ
>WENV182643581
OJLW01000126
[OJLW] metagenome; surface
23412
23338
-
Pro
GGG
[ENA]
¢þ
>WENV182643718
OJLW01000686
[OJLW] metagenome; surface
13033
13107
+
Pro
GGG
[ENA]
¢þ
>WENV182644569
OJLY01000011
[OJLY] metagenome; surface
59665
59591
-
Pro
GGG
[ENA]
¢þ
>WENV182644571
OJLY01000012
[OJLY] metagenome; surface
196937
197011
+
Pro
GGG
[ENA]
¢þ
>WENV182644914
OJLY01000784
[OJLY] metagenome; surface
12665
12739
+
Pro
GGG
[ENA]
¢þ
>WENV182645931
OJLZ01010752
[OJLZ] metagenome; surface
483
409
-
Pro
GGG
[ENA]
¢þ
>WENV182671790
OJNM01002832
[OJNM] metagenome; surface
527
453
-
Pro
GGG
[ENA]
¢þ
>C181039052
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1259904
1259828
-
Pro
GGG
-
¡û
>C181110002
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1689176
1689250
+
Pro
GGG
-
¡û
>C181225944
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
1362515
1362441
-
Pro
GGG
-
¡û
>C181226220
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
1186958
1187032
+
Pro
GGG
-
¡û
>W1910183487
BJNT01000019
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
52281
52355
+
Pro
GGG
[ENA]
¡û
>W1910225872
FMSX01000022
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
443714
443788
+
Pro
GGG
[ENA]
¡û
>W1910469854
FWYQ01000048
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
22348
22274
-
Pro
GGG
[ENA]
¡û
>W1911179022
NQMQ01000010
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
191058
191132
+
Pro
GGG
[ENA]
¡û
>W1911243334
NSGK01000004
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
23140
23066
-
Pro
GGG
[ENA]
¡û
>W1911243410
NSGL01000010
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
27585
27661
+
Pro
GGG
[ENA]
¡û
>W1911243453
NSGM01000005
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
183722
183796
+
Pro
GGG
[ENA]
¡û
>W1911243472
NSGN01000001
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
23127
23053
-
Pro
GGG
[ENA]
¡û
>W1911243558
NSGO01000009
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
22598
22524
-
Pro
GGG
[ENA]
¡û
>W1911243587
NSGP01000004
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
22549
22475
-
Pro
GGG
[ENA]
¡û
>W1911498452
OCTS01000005
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
272061
272137
+
Pro
GGG
[ENA]
¡û
>W1911596539
PNHG01000002
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
111568
111642
+
Pro
GGG
[ENA]
¡û
>W1810118387
PHQP01000018
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
25316
25240
-
Pro
GGG
[ENA]
¡û
>W1810187356
PKHN01000003
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
19816
19742
-
Pro
GGG
[ENA]
¡û
>W1810187457
PKHP01000005
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
186336
186410
+
Pro
GGG
[ENA]
¡û
>W1810187494
PKHQ01000002
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
308250
308324
+
Pro
GGG
[ENA]
¡û
>W1810623573
QHCV01000017
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
9826
9750
-
Pro
GGG
[ENA]
¡û
>C151045527
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
1280554
1280478
-
Pro
GGG
[Ensembl]
¡û
>C151045610
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
1149355
1149279
-
Pro
GGG
[Ensembl]
¡û
>W10124066
AEAU01000046
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
56408
56482
+
Pro
GGG
[ENA]
¡û
>C11106695
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1492176
1492102
-
Pro
GGG
[Ensembl]
¡û
>W1511351469
JRNG01000054
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
14694
14770
+
Pro
GGG
[ENA]
¡û
>W1511459430
JVKJ01000005
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
32304
32228
-
Pro
GGG
[ENA]
¡û
>W1511469855
JVVY01000010
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
93686
93762
+
Pro
GGG
[ENA]
¡û
>W11130903
AEAU01000046
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
56408
56482
+
Pro
GGG
[ENA]
¡û
>W1511644837
LDYD01000008
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
465234
465310
+
Pro
GGG
[ENA]
¡û
>C161041036
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
770378
770454
+
Pro
GGG
[Ensembl]
¡û
>W1610163660
FAUH01000021
Actinomycetota
Corynebacterium variabile [FAUH]
9333
9259
-
Pro
GGG
[ENA]
¡û
>W1610419427
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
340827
340753
-
Pro
GGG
[ENA]
¡û
>W1610436804
FJVG01000017
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
281153
281229
+
Pro
GGG
[ENA]
¡û
>C131012688
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
1253551
1253627
+
Pro
GGG
[Ensembl]
¡û
>C131005359
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1228146
1228070
-
Pro
GGG
[Ensembl]
¡û
>W1610996151
LXGG01000007
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
6900
6976
+
Pro
GGG
[ENA]
¡û
>W1710165327
FAUH01000021
Actinomycetota
Corynebacterium variabile [FAUH]
9333
9259
-
Pro
GGG
[ENA]
¡û
>W1710419163
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
340827
340753
-
Pro
GGG
[ENA]
¡û
>W1710436540
FJVG01000017
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
281153
281229
+
Pro
GGG
[ENA]
¡û
>W1710534344
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
2316256
2316180
-
Pro
GGG
[ENA]
¡û
>W1710552122
FOGQ01000001
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
497364
497438
+
Pro
GGG
[ENA]
¡û
>W1710596007
FTMH01000024
Actinomycetota
Corynebacterium afermentans [FTMH]
6868
6944
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK