This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148477 (54 seq.)
>W1711095155
LTGO01000008
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
11781
11855
+
Arg
TCT
[ENA]
¡û
>W1711096583
LTHX01000009
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
11967
12041
+
Arg
TCT
[ENA]
¡û
>W1711102616
LTNW01000026
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
1001
925
-
Arg
TCT
[ENA]
¡û
>W1711103627
LTOW01000036
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
11792
11866
+
Arg
TCT
[ENA]
¡û
>W1711105936
LTRH01000053
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
43775
43701
-
Arg
TCT
[ENA]
¡û
>W1711106543
LTRY01000029
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
12073
12147
+
Arg
TCT
[ENA]
¡û
>W1711106674
LTSB01000060
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
43583
43509
-
Arg
TCT
[ENA]
¡û
>W1711107224
LTSO01000077
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
112
38
-
Arg
TCT
[ENA]
¡û
>W1711108852
LTUC01000100
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
35798
35724
-
Arg
TCT
[ENA]
¡û
>W1711114737
LTZO01000053
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
11778
11852
+
Arg
TCT
[ENA]
¡û
>W1711185880
LWNT01000058
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
12122
12196
+
Arg
TCT
[ENA]
¡û
>W1711186553
LWOH01000063
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
798
722
-
Arg
TCT
[ENA]
¡û
>W1711186776
LWOM01000055
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
12249
12323
+
Arg
TCT
[ENA]
¡û
>W1711208414
LXGG01000019
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
19688
19612
-
Arg
TCT
[ENA]
¡û
>W1711482572
MKAX01000946
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
92981
93055
+
Arg
TCT
[ENA]
¡û
>W1711517380
MLJM01000040
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
36321
36247
-
Arg
TCT
[ENA]
¡û
>C171001979
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
2117436
2117512
+
Arg
TCT
-
¡û
>W131251645
CAVS020000017
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
40338
40262
-
Arg
TCT
[ENA]
¡û
>WENV181212494
OFBQ01001606
[OFBQ] metagenome; hydrothermal vent
822
896
+
Arg
TCT
[ENA]
¢þ
>WENV181212652
OFBS01002298
[OFBS] metagenome; hydrothermal vent
227
153
-
Arg
TCT
[ENA]
¢þ
>WENV182635963
OJKZ01000055
[OJKZ] metagenome; surface
50776
50850
+
Arg
TCT
[ENA]
¢þ
>WENV182636166
OJKZ01000680
[OJKZ] metagenome; surface
9874
9800
-
Arg
TCT
[ENA]
¢þ
>WENV182642232
OJLL01007480
[OJLL] metagenome; surface
166
240
+
Arg
TCT
[ENA]
¢þ
>WENV182643589
OJLW01000144
[OJLW] metagenome; surface
3452
3526
+
Arg
TCT
[ENA]
¢þ
>WENV182643653
OJLW01000393
[OJLW] metagenome; surface
5381
5455
+
Arg
TCT
[ENA]
¢þ
>WENV182644678
OJLY01000151
[OJLY] metagenome; surface
50523
50597
+
Arg
TCT
[ENA]
¢þ
>WENV182644740
OJLY01000245
[OJLY] metagenome; surface
18956
18882
-
Arg
TCT
[ENA]
¢þ
>WENV182646063
OJLZ01032611
[OJLZ] metagenome; surface
383
457
+
Arg
TCT
[ENA]
¢þ
>WENV182646478
OJMA01098997
[OJMA] metagenome; surface
328
406
+
Arg
TCT
[ENA]
¢þ
>WENV182671545
OJNM01000159
[OJNM] metagenome; surface
19257
19183
-
Arg
TCT
[ENA]
¢þ
>WENV182671736
OJNM01001798
[OJNM] metagenome; surface
2845
2771
-
Arg
TCT
[ENA]
¢þ
>WENV170727116
LSQX01405249
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
740
816
+
Arg
TCT
[ENA]
¢þ
>C181225926
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
2076556
2076630
+
Arg
TCT
-
¡û
>W141563957
JIAJ01000003
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
83330
83256
-
Arg
TCT
[ENA]
¡û
>W09124046
ACHJ01000098
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
100
26
-
Arg
TCT
[ENA]
¡û
>W1911179013
NQMQ01000002
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
57709
57635
-
Arg
TCT
[ENA]
¡û
>W1911243325
NSGK01000003
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
249907
249981
+
Arg
TCT
[ENA]
¡û
>W1911243391
NSGL01000002
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
62305
62231
-
Arg
TCT
[ENA]
¡û
>W1911243420
NSGM01000001
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
546944
547018
+
Arg
TCT
[ENA]
¡û
>W1911243481
NSGN01000004
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
162633
162707
+
Arg
TCT
[ENA]
¡û
>W1911243539
NSGO01000004
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
44487
44413
-
Arg
TCT
[ENA]
¡û
>W1911243594
NSGP01000006
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
5308
5234
-
Arg
TCT
[ENA]
¡û
>W1911596530
PNHG01000001
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
77673
77747
+
Arg
TCT
[ENA]
¡û
>W1911630658
PTJO01000003
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
758187
758263
+
Arg
TCT
[ENA]
¡û
>W1810187468
PKHP01000009
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
187
113
-
Arg
TCT
[ENA]
¡û
>W1810187517
PKHQ01000006
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
45424
45350
-
Arg
TCT
[ENA]
¡û
>C151040809
CP008944
Actinomycetota
Corynebacterium atypicum R2070 [CP008944]
1837112
1837186
+
Arg
TCT
[Ensembl]
¡û
>C151045509
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
1994277
1994351
+
Arg
TCT
[Ensembl]
¡û
>C151084448
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
2153074
2153150
+
Arg
TCT
[Ensembl]
¡û
>C131005397
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2501085
2501159
+
Arg
TCT
[Ensembl]
¡û
>W1610996176
LXGG01000019
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
19688
19612
-
Arg
TCT
[ENA]
¡û
>W1710534314
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
494511
494585
+
Arg
TCT
[ENA]
¡û
>W1710595998
FTMH01000020
Actinomycetota
Corynebacterium afermentans [FTMH]
19656
19580
-
Arg
TCT
[ENA]
¡û
>W1710598792
FTOF01000010
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
798
724
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK