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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149057 (84 seq.)
>C171063248
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1608132
1608055
-
Val
TAC
-
¡û
>C171063249
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1608022
1607947
-
Val
TAC
-
¡û
>W131233830
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
977402
977325
-
Val
TAC
[ENA]
¡û
>w014175
AAOG01000002
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
20138
20215
+
Val
TAC
[ENA]
¡û
>WENV180038696
LLBY010002354
[LLBY] soil metagenome; soil from tomato rhizosphere
153302
153379
+
Val
TAC
[ENA]
¡û
>WENV180105999
OAPE01011334
[OAPE] marine metagenome; Sterivex cartridges
231
306
+
Val
TAC
[ENA]
¡û
>WENV180242348
OBDI01194332
[OBDI] metagenome; diffuse fluid
198
123
-
Val
TAC
[ENA]
¡û
>WENV180383113
OBOU01001456
[OBOU] marine metagenome; ENV:00002010
1913
1988
+
Val
TAC
[ENA]
¡û
>WENV180386413
OBPB01168106
[OBPB] marine metagenome; Sterile flask
65
140
+
Val
TAC
[ENA]
¡û
>WENV180399905
OBQO01071088
[OBQO] marine metagenome; ENVO:00002010
280
205
-
Val
TAC
[ENA]
¡û
>WENV180590546
OCOT01063533
[OCOT] marine metagenome; ENVO:00002010
193
268
+
Val
TAC
[ENA]
¡û
>WENV180594018
OCOY01010868
[OCOY] marine metagenome; ENVO:00002010
248
173
-
Val
TAC
[ENA]
¡û
>WENV181392567
OFRW01084241
[OFRW] seawater metagenome; seawater
89
166
+
Val
TAC
[ENA]
¡û
>WENV181838510
OGVN01001704
[OGVN] freshwater metagenome; freshwater
1057
982
-
Val
TAC
[ENA]
¡û
>WENV181842412
OGVT01001682
[OGVT] freshwater metagenome; freshwater
1871
1946
+
Val
TAC
[ENA]
¡û
>WENV182547676
OJBT01000403
[OJBT] seawater metagenome; Sea water
550
475
-
Val
TAC
[ENA]
¡û
>WENV182551497
OJCC01022557
[OJCC] seawater metagenome; Sea water
256
179
-
Val
TAC
[ENA]
¡û
>WENV182553006
OJCQ01011087
[OJCQ] seawater metagenome; Sea water
172
247
+
Val
TAC
[ENA]
¡û
>WENV182558705
OJDN01001007
[OJDN] seawater metagenome; Sea water
6938
7013
+
Val
TAC
[ENA]
¡û
>WENV182560373
OJDU01000173
[OJDU] seawater metagenome; Sea water
3105
3030
-
Val
TAC
[ENA]
¡û
>WENV182565611
OJEH01017967
[OJEH] seawater metagenome; Sea water
227
152
-
Val
TAC
[ENA]
¡û
>WENV182567389
OJEO01000364
[OJEO] seawater metagenome; Sea water
13973
14048
+
Val
TAC
[ENA]
¡û
>WENV182569582
OJEZ01015529
[OJEZ] seawater metagenome; Sea water
464
387
-
Val
TAC
[ENA]
¡û
>WENV182578733
OJGP01000851
[OJGP] seawater metagenome; Sea water
2990
3065
+
Val
TAC
[ENA]
¡û
>WENV182585309
OJHH01007667
[OJHH] seawater metagenome; Sea water
2100
2175
+
Val
TAC
[ENA]
¡û
>WENV182590777
OJIK01000488
[OJIK] seawater metagenome; Sea water
6272
6197
-
Val
TAC
[ENA]
¡û
>WENV182594225
OJIV01001761
[OJIV] seawater metagenome; Sea water
868
793
-
Val
TAC
[ENA]
¡û
>WENV183056115
OLHI01000127
[OLHI] seawater metagenome; Sea water
21007
21082
+
Val
TAC
[ENA]
¡û
>WENV183061261
OLHZ01002208
[OLHZ] seawater metagenome; Sea water
3989
4064
+
Val
TAC
[ENA]
¡û
>WENV183065220
OLII01063553
[OLII] seawater metagenome; Sea water
2
77
+
Val
TAC
[ENA]
¡û
>WENV183617284
OOEE01148607
[OOEE] marine metagenome; sea ice
241
316
+
Val
TAC
[ENA]
¡û
>WENV183622835
OOFW01020748
[OOFW] marine metagenome; sea ice
409
484
+
Val
TAC
[ENA]
¡û
>WENV183623696
OOGA01040325
[OOGA] marine metagenome; sea ice
314
239
-
Val
TAC
[ENA]
¡û
>WENV183625706
OOGG01011435
[OOGG] marine metagenome; sea ice
230
155
-
Val
TAC
[ENA]
¡û
>WENV170327390
CESU01076005
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
261
186
-
Val
TAC
[ENA]
¡û
>WENV170538031
CEWR01047068
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7196
7273
+
Val
TAC
[ENA]
¡û
>WENV170539261
CEWR01158534
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1323
1400
+
Val
TAC
[ENA]
¡û
>WENV170568312
FLMP01029410
[FLMP] seawater metagenome; seawater
413
336
-
Val
TAC
[ENA]
¡û
>WENV170571829
FLOH01000330
[FLOH] marine metagenome; water
51375
51452
+
Val
TAC
[ENA]
¡û
>WENV170826237
MDSY01107717
[MDSY] marine metagenome; seawater
87
12
-
Val
TAC
[ENA]
¡û
>WENV170918380
MDTF01000139
[MDTF] marine metagenome; seawater
8301
8224
-
Val
TAC
[ENA]
¡û
>WENV170948170
MEHZ011102078
[MEHZ] marine metagenome; marine surface water
176
101
-
Val
TAC
[ENA]
¡û
>C181196554
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
2234483
2234558
+
Val
TAC
-
¡û
>C181196575
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
416811
416736
-
Val
TAC
-
¡û
>C191023114
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
916492
916415
-
Val
TAC
-
¡û
>W141807466
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
2335635
2335712
+
Val
TAC
[ENA]
¡û
>W1910785549
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
2279168
2279093
-
Val
TAC
[ENA]
¡û
>W1910796547
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1118018
1118095
+
Val
TAC
[ENA]
¡û
>W1910796548
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1145100
1145177
+
Val
TAC
[ENA]
¡û
>W1910796566
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
21330
21405
+
Val
TAC
[ENA]
¡û
>W1911243280
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14209
14284
+
Val
TAC
[ENA]
¡û
>W1810173132
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
2088536
2088461
-
Val
TAC
[ENA]
¡û
>W2010492885
JAAKGI010000026
Bacteroidota
Yeosuana sp. JLT21 [JAAKGI]
48242
48167
-
Val
TAC
[ENA]
¡û
>W2010894076
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
2279168
2279093
-
Val
TAC
[ENA]
¡û
>W2010904182
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1118018
1118095
+
Val
TAC
[ENA]
¡û
>W2010904183
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1145100
1145177
+
Val
TAC
[ENA]
¡û
>W2010904201
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
21330
21405
+
Val
TAC
[ENA]
¡û
>W2011068588
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14209
14284
+
Val
TAC
[ENA]
¡û
>W2011616414
SKBO01000002
Bacteroidota
Flavobacterium arcticum KCTC 42668 [SKBO]
163416
163341
-
Val
TAC
[ENA]
¡û
>W2011616421
SKBO01000005
Bacteroidota
Flavobacterium arcticum KCTC 42668 [SKBO]
13718
13793
+
Val
TAC
[ENA]
¡û
>W2011618943
SLUP01000001
Bacteroidota
Mariniflexile fucanivorans DSM 18792 [SLUP]
108707
108630
-
Val
TAC
[ENA]
¡û
>W2012107370
VORR01000056
Bacteroidota
Polaribacter sp. IC066 [VORR]
4127
4050
-
Val
TAC
[ENA]
¡û
>W2012107381
VORS01000003
Bacteroidota
Polaribacter sp. IC073 [VORS]
353579
353504
-
Val
TAC
[ENA]
¡û
>W2012107382
VORS01000003
Bacteroidota
Polaribacter sp. IC073 [VORS]
353036
352961
-
Val
TAC
[ENA]
¡û
>W2012107595
VORY01000024
Bacteroidota
Gillisia hiemivivida IC154 [VORY]
35683
35608
-
Val
TAC
[ENA]
¡û
>W2012426084
WRPN01000002
Bacteroidota
Mariniflexile sp. M5A1M [WRPN]
151872
151795
-
Val
TAC
[ENA]
¡û
>W2012435316
WTLD01000006
Bacteroidota
Polaribacter sp. 11A2H [WTLD]
277736
277659
-
Val
TAC
[ENA]
¡û
>W2012435317
WTLD01000006
Bacteroidota
Polaribacter sp. 11A2H [WTLD]
277535
277458
-
Val
TAC
[ENA]
¡û
>W2012435578
WTPZ01000004
Bacteroidota
Polaribacter sp. 20A6 [WTPZ]
352583
352506
-
Val
TAC
[ENA]
¡û
>W2012435579
WTPZ01000004
Bacteroidota
Polaribacter sp. 20A6 [WTPZ]
352381
352304
-
Val
TAC
[ENA]
¡û
>C211367027
CP079195
Bacteroidota
Polaribacter sp. NJDZ03 [CP079195]
1739697
1739620
-
Val
TAC
-
¡û
>C211367028
CP079195
Bacteroidota
Polaribacter sp. NJDZ03 [CP079195]
1739497
1739420
-
Val
TAC
-
¡û
>W2110776939
VRML01000025
Bacteroidota
Polaribacter gangjinensis JCM 16152 [VRML]
9697
9622
-
Val
TAC
[ENA]
¡û
>C241114917
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
2044074
2043997
-
Val
TAC
-
¡û
>C241114918
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
2039839
2039762
-
Val
TAC
-
¡û
>W2130024447
JADWOV010000208
Bacteroidota
Polaribacter sp. BAL334 [JADWOV]
2668
2591
-
Val
TAC
[ENA]
¡û
>W1511576861
LAQB01000101
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
175
100
-
Val
TAC
[ENA]
¡û
>W1610627140
LIDG01000129
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2363
2288
-
Val
TAC
[ENA]
¡û
>W1610909729
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58487
58564
+
Val
TAC
[ENA]
¡û
>W1610909730
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58597
58672
+
Val
TAC
[ENA]
¡û
>W1610977591
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77711
77634
-
Val
TAC
[ENA]
¡û
>W1610977592
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77509
77432
-
Val
TAC
[ENA]
¡û
>WENV078047
AAFY01012943
Fossil microbial community from Whale Fall (Santa Cruz Basin)
223
146
-
Val
TAC
[ENA]
>W1710758267
LIDG01000129
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2363
2288
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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