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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149059 (54 seq.)
>W1710856293
LLZH01000280
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
29216
29140
-
Ala
CGC
[ENA]
¡û
>W1710934856
LOJP01000002
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
589823
589747
-
Ala
CGC
[ENA]
¡û
>W1711183477
LWLB01000004
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
172911
172835
-
Ala
CGC
[ENA]
¡û
>W1711346052
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
4387533
4387457
-
Ala
CGC
[ENA]
¡û
>W1711388665
MEIA01000013
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
34002
34078
+
Ala
CGC
[ENA]
¡û
>W1711492089
MKKC01000088
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
34771
34695
-
Ala
CGC
[ENA]
¡û
>C171070744
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
5659408
5659332
-
Ala
CGC
-
¡û
>W131053583
ANAE01000105
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
57297
57223
-
Ala
CGC
[ENA]
¡û
>W131054585
ANAW01000054
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
10083
10159
+
Ala
CGC
[ENA]
¡û
>W131054639
ANAX01000174
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
21078
21154
+
Ala
CGC
[ENA]
¡û
>W131054767
ANAZ01000020
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
59214
59288
+
Ala
CGC
[ENA]
¡û
>W131054792
ANBA01000003
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
134060
133984
-
Ala
CGC
[ENA]
¡û
>W131054900
ANBC01000080
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
4870
4794
-
Ala
CGC
[ENA]
¡û
>W131179366
ARMI01000048
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
152317
152241
-
Ala
CGC
[ENA]
¡û
>WENV180343394
OBLK01010873
[OBLK] soil metagenome; Clay
890
814
-
Ala
CGC
[ENA]
¢þ
>W141219684
AZXF01000013
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
10183
10259
+
Ala
CGC
[ENA]
¡û
>WENV170564626
CZKT01000083
[CZKT] soil metagenome genome assembly CiPEHR-AK-2010-FBin.14, contig:; soil
5967
6045
+
Ala
CGC
[ENA]
¢þ
>C181064872
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
5745510
5745435
-
Ala
CGC
-
¡û
>C191007433
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
1677787
1677713
-
Ala
CGC
-
¡û
>C191212918
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
3241589
3241514
-
Ala
CGC
-
¡û
>W141757540
JNXY01000026
Actinomycetota
Catenuloplanes japonicus [JNXY]
60908
60984
+
Ala
CGC
[ENA]
¡û
>W141758322
JNYN01001856
Actinomycetota
Actinoplanes liguriensis [JNYN]
669
745
+
Ala
CGC
[ENA]
¡û
>W09109569
ABUI01000021
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
38050
38126
+
Ala
CGC
[ENA]
¡û
>C141004744
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
8703002
8702926
-
Ala
CGC
[Ensembl]
¡û
>W1911492510
OBDY01000001
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
549590
549664
+
Ala
CGC
[ENA]
¡û
>W1911676734
QHHV01000269
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
2896
2822
-
Ala
CGC
[ENA]
¡û
>W1810046823
NYMS01000004
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
157170
157095
-
Ala
CGC
[ENA]
¡û
>W1810356492
PVMZ01000002
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
202381
202456
+
Ala
CGC
[ENA]
¡û
>W1810368145
PVZG01000008
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
266485
266411
-
Ala
CGC
[ENA]
¡û
>W1810608307
QGTF01000006
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
93583
93509
-
Ala
CGC
[ENA]
¡û
>W1810694914
QLMJ01000006
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
287143
287217
+
Ala
CGC
[ENA]
¡û
>W1810756422
QPFC01001032
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
1973
1898
-
Ala
CGC
[ENA]
¡û
>C10109697
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
4880728
4880652
-
Ala
CGC
[Ensembl]
¡û
>W1511545086
JZKF01000003
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
110567
110493
-
Ala
CGC
[ENA]
¡û
>W1511584550
LAVM01000018
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
14260
14334
+
Ala
CGC
[ENA]
¡û
>W1511656819
LEKI01000087
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
8171
8095
-
Ala
CGC
[ENA]
¡û
>W1511697695
LGEC01000070
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
49605
49529
-
Ala
CGC
[ENA]
¡û
>W1610052393
BBHW01000111
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
3210
3134
-
Ala
CGC
[ENA]
¡û
>W1610052473
BBHX01001188
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
808
732
-
Ala
CGC
[ENA]
¡û
>W1610052503
BBHY01000522
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
91
167
+
Ala
CGC
[ENA]
¡û
>W1610052537
BBHZ01000178
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
71
147
+
Ala
CGC
[ENA]
¡û
>W1610052617
BBIB01000506
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
131
207
+
Ala
CGC
[ENA]
¡û
>W1610068903
BCRR01000023
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
86009
85933
-
Ala
CGC
[ENA]
¡û
>C131015983
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
8580599
8580523
-
Ala
CGC
[Ensembl]
¡û
>W1610718674
LLZH01000280
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
29216
29140
-
Ala
CGC
[ENA]
¡û
>W1610792344
LOJP01000002
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
589823
589747
-
Ala
CGC
[ENA]
¡û
>W1710048771
BBHW01000111
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
3210
3134
-
Ala
CGC
[ENA]
¡û
>W1710048851
BBHX01001188
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
808
732
-
Ala
CGC
[ENA]
¡û
>W1710048881
BBHY01000522
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
91
167
+
Ala
CGC
[ENA]
¡û
>W1710048915
BBHZ01000178
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
71
147
+
Ala
CGC
[ENA]
¡û
>W1710048995
BBIB01000506
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
131
207
+
Ala
CGC
[ENA]
¡û
>W1710066276
BCRR01000023
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
86009
85933
-
Ala
CGC
[ENA]
¡û
>W1710561031
FONV01000012
Actinomycetota
Actinoplanes philippinensis [FONV]
355325
355401
+
Ala
CGC
[ENA]
¡û
>W1710588485
FQZK01000003
Actinomycetota
Nocardiopsis flavescens [FQZK]
347277
347203
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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