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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149066 (135 seq.)
>W1710996586
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
808965
809041
+
Met
CAT
[ENA]
¡û
>W131221456
AUAM01000022
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
86755
86831
+
Met
CAT
[ENA]
¡û
>W1711499145
MKQD01000018
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
72721
72645
-
Met
CAT
[ENA]
¡û
>W1711585447
MNZS01000020
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
34806
34882
+
Met
CAT
[ENA]
¡û
>W1711767436
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
66965
67041
+
Met
CAT
[ENA]
¡û
>W1711947410
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
589492
589416
-
Met
CAT
[ENA]
¡û
>W1711947493
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
66997
67073
+
Met
CAT
[ENA]
¡û
>W1711947548
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
519662
519586
-
Met
CAT
[ENA]
¡û
>W1711947649
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
559069
558993
-
Met
CAT
[ENA]
¡û
>W1711947702
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
387269
387193
-
Met
CAT
[ENA]
¡û
>W131178004
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1444945
1444869
-
Met
CAT
[ENA]
¡û
>W131186713
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
979432
979356
-
Met
CAT
[ENA]
¡û
>C025342
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
446774
446850
+
Met
CAT
[Ensembl]
¡û
>w015544
AAPG01000047
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
15741
15819
+
Met
CAT
[ENA]
¡û
>w015539
AAPG01000047
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
15051
15129
+
Met
CAT
[ENA]
¡û
>C171034444
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
615611
615687
+
Met
CAT
-
¡û
>C171034554
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3592047
3591971
-
Met
CAT
-
¡û
>C171108407
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
874265
874189
-
Met
CAT
-
¡û
>WENV180042177
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1047
1120
+
Met
CAT
[ENA]
¢þ
>WENV180396948
OBPW01046363
[OBPW] marine metagenome; seawater
314
238
-
Met
CAT
[ENA]
¢þ
>W141169691
AXWP01000001
Gammaproteobacteria
Psychromonas arctica DSM 14288 [AXWP]
87296
87372
+
Met
CAT
[ENA]
¡û
>W141170913
AXZC01000002
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
370186
370262
+
Met
CAT
[ENA]
¡û
>WENV182540225
OJAF01000407
[OJAF] seawater metagenome; Sea water
2405
2481
+
Met
CAT
[ENA]
¢þ
>W141252241
CBRF010000426
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
411
335
-
Met
CAT
[ENA]
¡û
>WENV182541867
OJAU01014598
[OJAU] seawater metagenome; Sea water
204
128
-
Met
CAT
[ENA]
¢þ
>WENV182542005
OJAV01000245
[OJAV] seawater metagenome; Sea water
23582
23658
+
Met
CAT
[ENA]
¢þ
>WENV182543045
OJAZ01021303
[OJAZ] seawater metagenome; Sea water
438
362
-
Met
CAT
[ENA]
¢þ
>WENV182543686
OJBC01000261
[OJBC] seawater metagenome; Sea water
23583
23659
+
Met
CAT
[ENA]
¢þ
>WENV182544572
OJBI01000007
[OJBI] seawater metagenome; Sea water
208002
208078
+
Met
CAT
[ENA]
¢þ
>WENV182544806
OJBJ01004730
[OJBJ] seawater metagenome; Sea water
812
888
+
Met
CAT
[ENA]
¢þ
>WENV182545113
OJBM01000133
[OJBM] seawater metagenome; Sea water
10447
10523
+
Met
CAT
[ENA]
¢þ
>WENV182546421
OJBO01024909
[OJBO] seawater metagenome; Sea water
223
147
-
Met
CAT
[ENA]
¢þ
>WENV182549230
OJBY01000018
[OJBY] seawater metagenome; Sea water
27090
27014
-
Met
CAT
[ENA]
¢þ
>WENV182549922
OJBZ01000432
[OJBZ] seawater metagenome; Sea water
168
92
-
Met
CAT
[ENA]
¢þ
>WENV182552469
OJCK01000235
[OJCK] seawater metagenome; Sea water
23583
23659
+
Met
CAT
[ENA]
¢þ
>WENV182554704
OJCW01002464
[OJCW] seawater metagenome; Sea water
2829
2905
+
Met
CAT
[ENA]
¢þ
>WENV182555218
OJCY01014204
[OJCY] seawater metagenome; Sea water
750
826
+
Met
CAT
[ENA]
¢þ
>WENV182556891
OJDH01000954
[OJDH] seawater metagenome; Sea water
165
89
-
Met
CAT
[ENA]
¢þ
>WENV182557041
OJDI01000503
[OJDI] seawater metagenome; Sea water
14854
14930
+
Met
CAT
[ENA]
¢þ
>WENV182558166
OJDL01009547
[OJDL] seawater metagenome; Sea water
660
584
-
Met
CAT
[ENA]
¢þ
>WENV182558664
OJDN01000242
[OJDN] seawater metagenome; Sea water
168
92
-
Met
CAT
[ENA]
¢þ
>WENV182559964
OJDR01000030
[OJDR] seawater metagenome; Sea water
66904
66980
+
Met
CAT
[ENA]
¢þ
>WENV182560482
OJDU01002778
[OJDU] seawater metagenome; Sea water
2348
2424
+
Met
CAT
[ENA]
¢þ
>WENV182561146
OJDV01008454
[OJDV] seawater metagenome; Sea water
1597
1673
+
Met
CAT
[ENA]
¢þ
>WENV182562430
OJDZ01002937
[OJDZ] seawater metagenome; Sea water
3747
3823
+
Met
CAT
[ENA]
¢þ
>WENV182565173
OJEH01000121
[OJEH] seawater metagenome; Sea water
441
365
-
Met
CAT
[ENA]
¢þ
>WENV182565955
OJEI01003382
[OJEI] seawater metagenome; Sea water
660
584
-
Met
CAT
[ENA]
¢þ
>WENV182566300
OJEJ01008619
[OJEJ] seawater metagenome; Sea water
550
626
+
Met
CAT
[ENA]
¢þ
>WENV182567391
OJEO01000371
[OJEO] seawater metagenome; Sea water
14071
14147
+
Met
CAT
[ENA]
¢þ
>WENV182568234
OJES01000011
[OJES] seawater metagenome; Sea water
175
251
+
Met
CAT
[ENA]
¢þ
>WENV182568284
OJET01000031
[OJET] seawater metagenome; Sea water
64167
64243
+
Met
CAT
[ENA]
¢þ
>WENV182573127
OJFP01000149
[OJFP] seawater metagenome; Sea water
23582
23658
+
Met
CAT
[ENA]
¢þ
>WENV182574913
OJFS01007676
[OJFS] seawater metagenome; Sea water
1186
1262
+
Met
CAT
[ENA]
¢þ
>WENV182575129
OJFU01000100
[OJFU] seawater metagenome; Sea water
23582
23658
+
Met
CAT
[ENA]
¢þ
>WENV182575527
OJFV01000029
[OJFV] seawater metagenome; Sea water
165
89
-
Met
CAT
[ENA]
¢þ
>WENV182576051
OJFX01001945
[OJFX] seawater metagenome; Sea water
6673
6749
+
Met
CAT
[ENA]
¢þ
>WENV182577020
OJGC01000518
[OJGC] seawater metagenome; Sea water
9021
9097
+
Met
CAT
[ENA]
¢þ
>WENV182577417
OJGE01005029
[OJGE] seawater metagenome; Sea water
476
552
+
Met
CAT
[ENA]
¢þ
>WENV182577690
OJGH01001144
[OJGH] seawater metagenome; Sea water
4563
4639
+
Met
CAT
[ENA]
¢þ
>WENV182577821
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
51
127
+
Met
CAT
[ENA]
¢þ
>WENV182578847
OJGP01006922
[OJGP] seawater metagenome; Sea water
460
384
-
Met
CAT
[ENA]
¢þ
>WENV182579691
OJGT01000007
[OJGT] seawater metagenome; Sea water
135352
135276
-
Met
CAT
[ENA]
¢þ
>WENV182580804
OJGW01014011
[OJGW] seawater metagenome; Sea water
1090
1166
+
Met
CAT
[ENA]
¢þ
>WENV182581571
OJGX01014765
[OJGX] seawater metagenome; Sea water
939
1015
+
Met
CAT
[ENA]
¢þ
>WENV182584589
OJHG01002336
[OJHG] seawater metagenome; Sea water
446
370
-
Met
CAT
[ENA]
¢þ
>WENV182585417
OJHH01019141
[OJHH] seawater metagenome; Sea water
290
214
-
Met
CAT
[ENA]
¢þ
>WENV182586459
OJHK01000522
[OJHK] seawater metagenome; Sea water
23582
23658
+
Met
CAT
[ENA]
¢þ
>WENV182588156
OJHO01009711
[OJHO] seawater metagenome; Sea water
438
362
-
Met
CAT
[ENA]
¢þ
>WENV182588813
OJHY01000132
[OJHY] seawater metagenome; Sea water
22338
22262
-
Met
CAT
[ENA]
¢þ
>WENV182590609
OJIJ01000338
[OJIJ] seawater metagenome; Sea water
3148
3224
+
Met
CAT
[ENA]
¢þ
>WENV182591750
OJIO01003689
[OJIO] seawater metagenome; Sea water
315
239
-
Met
CAT
[ENA]
¢þ
>WENV182592680
OJIR01009714
[OJIR] seawater metagenome; Sea water
1186
1262
+
Met
CAT
[ENA]
¢þ
>WENV182593290
OJIT01026494
[OJIT] seawater metagenome; Sea water
120
196
+
Met
CAT
[ENA]
¢þ
>WENV182594013
OJIV01000053
[OJIV] seawater metagenome; Sea water
23584
23660
+
Met
CAT
[ENA]
¢þ
>W141279820
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
365704
365780
+
Met
CAT
[ENA]
¡û
>WENV183055497
OLHD01000040
[OLHD] seawater metagenome; Sea water
165
89
-
Met
CAT
[ENA]
¢þ
>WENV183055671
OLHF01000021
[OLHF] seawater metagenome; Sea water
46597
46673
+
Met
CAT
[ENA]
¢þ
>WENV183056171
OLHI01000627
[OLHI] seawater metagenome; Sea water
2019
1943
-
Met
CAT
[ENA]
¢þ
>WENV183057655
OLHM01000206
[OLHM] seawater metagenome; Sea water
23583
23659
+
Met
CAT
[ENA]
¢þ
>WENV183057943
OLHN01000009
[OLHN] seawater metagenome; Sea water
70348
70424
+
Met
CAT
[ENA]
¢þ
>WENV183059742
OLHV01001879
[OLHV] seawater metagenome; Sea water
1703
1779
+
Met
CAT
[ENA]
¢þ
>WENV183059955
OLHW01000802
[OLHW] seawater metagenome; Sea water
2713
2789
+
Met
CAT
[ENA]
¢þ
>WENV183064794
OLII01000697
[OLII] seawater metagenome; Sea water
767
843
+
Met
CAT
[ENA]
¢þ
>WENV183704333
PDWI01000159
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
28934
29010
+
Met
CAT
[ENA]
¢þ
>WENV170220331
CEPZ01145228
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
560
636
+
Met
CAT
[ENA]
¢þ
>WENV170305220
CESI01126566
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
407
331
-
Met
CAT
[ENA]
¢þ
>WENV170646895
JQIA01005150
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
6000
6076
+
Met
CAT
[ENA]
¢þ
>WENV170699019
LGVF01462463
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
969
893
-
Met
CAT
[ENA]
¢þ
>WENV170704853
LLEN01004193
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
274
350
+
Met
CAT
[ENA]
¢þ
>WENV170779615
LZQQ01000330
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
4172
4248
+
Met
CAT
[ENA]
¢þ
>WENV170780967
MAAB01028900
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
168470
168546
+
Met
CAT
[ENA]
¢þ
>WENV170781145
MAAB01029563
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
149359
149435
+
Met
CAT
[ENA]
¢þ
>WENV170781217
MAAB01029710
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
227
151
-
Met
CAT
[ENA]
¢þ
>WENV170781222
MAAB01029734
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
13606
13682
+
Met
CAT
[ENA]
¢þ
>WENV170781226
MAAB01029734
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14181
14257
+
Met
CAT
[ENA]
¢þ
>WENV170781311
MAAB01032184
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
797
873
+
Met
CAT
[ENA]
¢þ
>WENV170782114
MAAC01008843
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1323
1399
+
Met
CAT
[ENA]
¢þ
>WENV170782524
MAAC01010179
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
160926
161002
+
Met
CAT
[ENA]
¢þ
>WENV170783160
MAAC01014539
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3431
3355
-
Met
CAT
[ENA]
¢þ
>WENV170783164
MAAC01014539
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2856
2780
-
Met
CAT
[ENA]
¢þ
>WENV170783205
MAAC01014840
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
17755
17831
+
Met
CAT
[ENA]
¢þ
>WENV170820411
MDSY01004256
[MDSY] marine metagenome; seawater
3227
3303
+
Met
CAT
[ENA]
¢þ
>C181169974
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152515
1152439
-
Met
CAT
-
¡û
>C191004369
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
445760
445836
+
Met
CAT
-
¡û
>C191011671
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2445557
2445481
-
Met
CAT
-
¡û
>C191084369
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
414594
414670
+
Met
CAT
-
¡û
>C191098454
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2316786
2316710
-
Met
CAT
-
¡û
>C191128391
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1174265
1174189
-
Met
CAT
-
¡û
>C191134024
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
514847
514923
+
Met
CAT
-
¡û
>C191180142
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
458586
458662
+
Met
CAT
-
¡û
>W141700061
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
1053977
1053901
-
Met
CAT
[ENA]
¡û
>W141733779
JNLD01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
407906
407982
+
Met
CAT
[ENA]
¡û
>W141776943
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
2354985
2355061
+
Met
CAT
[ENA]
¡û
>W141776997
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1411822
1411746
-
Met
CAT
[ENA]
¡û
>W141820253
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
315198
315274
+
Met
CAT
[ENA]
¡û
>W1911810991
QZCH01000001
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
62319
62395
+
Met
CAT
[ENA]
¡û
>W1911810995
QZCH01000001
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
62810
62886
+
Met
CAT
[ENA]
¡û
>W1810185551
PKGB01000016
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
49486
49562
+
Met
CAT
[ENA]
¡û
>W1810602880
QGKL01000009
Gammaproteobacteria
Leucothrix arctica IMCC9719 [QGKL]
42426
42350
-
Met
CAT
[ENA]
¡û
>W1810602950
QGKM01000013
Gammaproteobacteria
Leucothrix pacifica JCM 18388 [QGKM]
164218
164142
-
Met
CAT
[ENA]
¡û
>W1810724848
QOCB01000133
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
14871
14947
+
Met
CAT
[ENA]
¡û
>W1810886980
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
1017332
1017408
+
Met
CAT
[ENA]
¡û
>W1810886985
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
1017958
1018034
+
Met
CAT
[ENA]
¡û
>W1810887131
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
1541775
1541699
-
Met
CAT
[ENA]
¡û
>W1810887136
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
1541005
1540929
-
Met
CAT
[ENA]
¡û
>W1810887223
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
1502190
1502114
-
Met
CAT
[ENA]
¡û
>W1810887228
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
1501581
1501505
-
Met
CAT
[ENA]
¡û
>W1511533722
JYNI01000004
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
26244
26320
+
Met
CAT
[ENA]
¡û
>W1511533727
JYNI01000004
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
26913
26989
+
Met
CAT
[ENA]
¡û
>W1511533818
JYNJ01000066
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
16548
16472
-
Met
CAT
[ENA]
¡û
>C131013814
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2112965
2113041
+
Met
CAT
[Ensembl]
¡û
>C131013819
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2113656
2113732
+
Met
CAT
[Ensembl]
¡û
>W1610851243
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
808965
809041
+
Met
CAT
[ENA]
¡û
>W1710545221
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
189161
189237
+
Met
CAT
[ENA]
¡û
>W1710553221
FOHK01000009
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
34334
34410
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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