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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149092 (64 seq.)
>W1710786303
LJIV01000020
Bacillota
Leuconostoc lactis [LJIV]
105
32
-
Ile
GAT
[ENA]
¡û
>W1711627414
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
1532
1605
+
Ile
GAT
[ENA]
¡û
>W1711627427
MPLL01000013
Bacillota
Leuconostoc lactis [MPLL]
7
80
+
Ile
GAT
[ENA]
¡û
>W1711627506
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
1532
1605
+
Ile
GAT
[ENA]
¡û
>W1711627520
MPLN01000015
Bacillota
Leuconostoc lactis [MPLN]
7
80
+
Ile
GAT
[ENA]
¡û
>W1711999762
NDXG01000004
Bacillota
Leuconostoc citreum [NDXG]
102
175
+
Ile
GAT
[ENA]
¡û
>W1711999800
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
84244
84171
-
Ile
GAT
[ENA]
¡û
>C171047460
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
542045
542121
+
Ile
GAT
-
¡û
>C171047476
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
625125
625201
+
Ile
GAT
-
¡û
>WENV180503459
OCAM01026970
[OCAM] human gut metagenome; faeces
597
524
-
Ile
GAT
[ENA]
¢þ
>WENV180564586
OCLE01003815
[OCLE] human gut metagenome; human gut
176
103
-
Ile
GAT
[ENA]
¢þ
>WENV182610628
OJJW01000042
[OJJW] metagenome; faeces
46481
46408
-
Ile
GAT
[ENA]
¢þ
>WENV182610766
OJJW01000492
[OJJW] metagenome; faeces
36
109
+
Ile
GAT
[ENA]
¢þ
>WENV182629228
OJKR01045094
[OJKR] metagenome; surface
350
423
+
Ile
GAT
[ENA]
¢þ
>C08006004
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1770964
1770891
-
Ile
GAT
[Ensembl]
¡û
>C08006020
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1680000
1679927
-
Ile
GAT
[Ensembl]
¡û
>WENV170016598
AZMM01007458
[AZMM] human gut metagenome; premature infant gut
2947
2874
-
Ile
GAT
[ENA]
¢þ
>WENV170201296
CEPQ01007896
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3907
3831
-
Ile
GAT
[ENA]
¢þ
>WENV170204343
CEPS01187065
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1763
1687
-
Ile
GAT
[ENA]
¢þ
>WENV170208915
CEPV01021347
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
187383
187459
+
Ile
GAT
[ENA]
¢þ
>WENV170744887
LULX01017511
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
78
2
-
Ile
GAT
[ENA]
¢þ
>C191013629
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1577382
1577307
-
Ile
GAT
-
¡û
>C191013658
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1220346
1220271
-
Ile
GAT
-
¡û
>C191155347
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1894692
1894619
-
Ile
GAT
-
¡û
>C191155363
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1763513
1763440
-
Ile
GAT
-
¡û
>W141695539
JMEA01000027
Bacillota
Leuconostoc lactis [JMEA]
1393
1469
+
Ile
GAT
[ENA]
¡û
>W1910181847
BJMJ01000045
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
117
44
-
Ile
GAT
[ENA]
¡û
>W1910822003
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
906511
906438
-
Ile
GAT
[ENA]
¡û
>W1910822019
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
816409
816336
-
Ile
GAT
[ENA]
¡û
>W1911177209
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1705015
1704942
-
Ile
GAT
[ENA]
¡û
>W1911177225
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1622932
1622859
-
Ile
GAT
[ENA]
¡û
>W1911283581
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
1531
1604
+
Ile
GAT
[ENA]
¡û
>W1911283607
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
13
86
+
Ile
GAT
[ENA]
¡û
>W1911541753
OOIO01000012
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
1295
1368
+
Ile
GAT
[ENA]
¡û
>W1911631660
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
84230
84157
-
Ile
GAT
[ENA]
¡û
>W1911631680
PUFH01000003
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
1499
1572
+
Ile
GAT
[ENA]
¡û
>W1911631693
PUFH01000004
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
1298
1371
+
Ile
GAT
[ENA]
¡û
>W1911631743
PUFI01000003
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
1481
1556
+
Ile
GAT
[ENA]
¡û
>W1911631756
PUFI01000005
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
1294
1369
+
Ile
GAT
[ENA]
¡û
>W1911631784
PUFI01000009
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
1294
1369
+
Ile
GAT
[ENA]
¡û
>W1810784470
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
830710
830635
-
Ile
GAT
[ENA]
¡û
>W1510046248
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
114371
114298
-
Ile
GAT
[ENA]
¡û
>W1510046264
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
17264
17191
-
Ile
GAT
[ENA]
¡û
>W1510046310
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
190251
190178
-
Ile
GAT
[ENA]
¡û
>C10108470
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1132945
1133018
+
Ile
GAT
[Ensembl]
¡û
>C10108486
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1264123
1264196
+
Ile
GAT
[Ensembl]
¡û
>C11112647
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1292178
1292105
-
Ile
GAT
[Ensembl]
¡û
>C11112663
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1160998
1160925
-
Ile
GAT
[Ensembl]
¡û
>W1511468954
JVUU01000022
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
283
356
+
Ile
GAT
[ENA]
¡û
>W1511468961
JVUU01000023
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
153309
153236
-
Ile
GAT
[ENA]
¡û
>W1511468992
JVUU01000034
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
1467
1540
+
Ile
GAT
[ENA]
¡û
>W1511469017
JVUV01000029
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
32952
32879
-
Ile
GAT
[ENA]
¡û
>W1511469058
JVUV01000055
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
58182
58109
-
Ile
GAT
[ENA]
¡û
>W11137099
AEGQ01000002
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
121
48
-
Ile
GAT
[ENA]
¡û
>W11138650
AEIZ01000005
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
1197
1272
+
Ile
GAT
[ENA]
¡û
>W11184712
BACM01000006
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
122
49
-
Ile
GAT
[ENA]
¡û
>C161100083
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
844959
845035
+
Ile
GAT
[Ensembl]
¡û
>C161100099
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
949031
949107
+
Ile
GAT
[Ensembl]
¡û
>W121127470
CAGE01000041
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
1203
1276
+
Ile
GAT
[ENA]
¡û
>W121127517
CAGF01000061
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
113
40
-
Ile
GAT
[ENA]
¡û
>W121127564
CAGG01000036
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
1203
1276
+
Ile
GAT
[ENA]
¡û
>C131008284
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
37434
37510
+
Ile
GAT
[Ensembl]
¡û
>C131008302
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
166279
166355
+
Ile
GAT
[Ensembl]
¡û
>W1610650158
LJIV01000020
Bacillota
Leuconostoc lactis [LJIV]
105
32
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK