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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149096 (38 seq.)
>W131053685
ANAH01000025
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
42687
42762
+
Met
CAT
[ENA]
¡û
>W131086614
AOBT01000005
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
80507
80433
-
Met
CAT
[ENA]
¡û
>W1711625279
MPIN01000009
Myxococcota
Cystobacter ferrugineus [MPIN]
314483
314558
+
Met
CAT
[ENA]
¡û
>W1711628632
MPOI01000010
Myxococcota
Archangium sp. Cb G35 [MPOI]
78812
78887
+
Met
CAT
[ENA]
¡û
>C014499
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
5443601
5443674
+
Met
CAT
[Ensembl]
¡û
>w012181
AAMD01000280
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
6151
6227
+
Met
CAT
[ENA]
¡û
>WENV170558675
CXWL01084586
[CXWL] groundwater metagenome; biofilm material
1406
1333
-
Met
CAT
[ENA]
¢þ
>WENV170646175
JQGG01013840
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
245
319
+
Met
CAT
[ENA]
¢þ
>C181057854
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
7139487
7139562
+
Met
CAT
-
¡û
>C181059830
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
9609467
9609540
+
Met
CAT
-
¡û
>C181060639
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
5464103
5464177
+
Met
CAT
-
¡û
>C191013135
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
5616246
5616320
+
Met
CAT
-
¡û
>C191013200
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
5399173
5399247
+
Met
CAT
-
¡û
>C191013266
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
5218009
5218083
+
Met
CAT
-
¡û
>C191013331
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
5566277
5566351
+
Met
CAT
-
¡û
>C191013396
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
5441256
5441330
+
Met
CAT
-
¡û
>C191013461
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
5441251
5441325
+
Met
CAT
-
¡û
>C191128689
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
4187182
4187109
-
Met
CAT
-
¡û
>W141695171
JMCB01000004
Myxococcota
Hyalangium minutum [JMCB]
108266
108190
-
Met
CAT
[ENA]
¡û
>W141695227
JMCC01000014
Myxococcota
Enhygromyxa salina [JMCC]
32127
32203
+
Met
CAT
[ENA]
¡û
>W141806681
JPMI01000289
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
128513
128438
-
Met
CAT
[ENA]
¡û
>W1911701606
QNUN01000012
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
44909
44835
-
Met
CAT
[ENA]
¡û
>W1810452249
PZOX01000034
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
16701
16776
+
Met
CAT
[ENA]
¡û
>W1810884715
QUMU01000013
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
127530
127455
-
Met
CAT
[ENA]
¡û
>C151008178
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
6940155
6940229
+
Met
CAT
[Ensembl]
¡û
>C151083591
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
5674475
5674400
-
Met
CAT
[Ensembl]
¡û
>C151091053
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
3003843
3003769
-
Met
CAT
[Ensembl]
¡û
>C11114331
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
7415679
7415755
+
Met
CAT
[Ensembl]
¡û
>C11119118
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
5830949
5831025
+
Met
CAT
[Ensembl]
¡û
>C121012089
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
4307681
4307605
-
Met
CAT
[Ensembl]
¡û
>W121102883
AKXT01000045
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
198
272
+
Met
CAT
[ENA]
¡û
>W121103115
AKYI01000518
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
3875
3949
+
Met
CAT
[ENA]
¡û
>C131011667
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
6284136
6284210
+
Met
CAT
[Ensembl]
¡û
>W1710513704
FNAJ01000005
Myxococcota
Myxococcus virescens [FNAJ]
570764
570840
+
Met
CAT
[ENA]
¡û
>W1710529784
FNOH01000003
Myxococcota
Myxococcus xanthus [FNOH]
872659
872733
+
Met
CAT
[ENA]
¡û
>W1710544112
FOAP01000004
Myxococcota
Stigmatella aurantiaca [FOAP]
252779
252705
-
Met
CAT
[ENA]
¡û
>W1710553987
FOIB01000005
Myxococcota
Myxococcus fulvus [FOIB]
406166
406240
+
Met
CAT
[ENA]
¡û
>W1710554337
FOIJ01000001
Myxococcota
Stigmatella erecta [FOIJ]
27186
27112
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK