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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149274 (63 seq.)
>W1711699354
MSLQ01000001
Bacillota
Alkalihalophilus pseudofirmus [MSLQ]
145704
145628
-
Met
CAT
[ENA]
¡û
>W1711699380
MSLQ01000006
Bacillota
Alkalihalophilus pseudofirmus [MSLQ]
232206
232130
-
Met
CAT
[ENA]
¡û
>W131196033
ASTA01000009
Bacillota
Anaerotruncus sp. G3(2012) [ASTA]
4863
4939
+
Met
CAT
[ENA]
¡û
>WENV180197064
OBAA01044428
[OBAA] human gut metagenome; faeces
52
128
+
fMet
CAT
[ENA]
¢þ
>W141054627
AOFO01000007
Bacillota
Bacillus velezensis SK19.001 [AOFO]
47
123
+
Met
CAT
[ENA]
¡û
>WENV180632690
OCQZ01005461
[OCQZ] human gut metagenome; human gut
861
785
-
fMet
CAT
[ENA]
¢þ
>W141067349
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1009375
1009451
+
Met
CAT
[ENA]
¡û
>WENV180825363
ODJY01000620
[ODJY] human metagenome; G_DNA_Stool
237
161
-
fMet
CAT
[ENA]
¢þ
>WENV181022498
ODWW01001079
[ODWW] human metagenome; G_DNA_Stool
1333
1409
+
fMet
CAT
[ENA]
¢þ
>WENV181117986
OEFH01003203
[OEFH] human metagenome; G_DNA_Stool
9797
9870
+
fMet
CAT
[ENA]
¢þ
>WENV181198048
OERC01030869
[OERC] metagenome; Caecal content
490
414
-
fMet
CAT
[ENA]
¢þ
>WENV181235919
OFEY01007493
[OFEY] mouse gut metagenome; faeces
62
138
+
fMet
CAT
[ENA]
¢þ
>WENV181442038
OGDN01041259
[OGDN] human gut metagenome; human gut
654
578
-
fMet
CAT
[ENA]
¢þ
>WENV181539447
OGIA01000039
[OGIA] metagenome; Human gut stool
174367
174291
-
fMet
CAT
[ENA]
¢þ
>WENV181561141
OGJD01000260
[OGJD] metagenome; Human gut stool
187
111
-
fMet
CAT
[ENA]
¢þ
>WENV181571698
OGJP01000568
[OGJP] metagenome; Human gut stool
2968
3044
+
fMet
CAT
[ENA]
¢þ
>WENV181591123
OGKO01006948
[OGKO] metagenome; Human gut stool
2278
2354
+
fMet
CAT
[ENA]
¢þ
>WENV181593893
OGKT01014409
[OGKT] metagenome; Human gut stool
5
81
+
fMet
CAT
[ENA]
¢þ
>WENV181605104
OGLJ01001704
[OGLJ] metagenome; Human gut stool
13813
13737
-
fMet
CAT
[ENA]
¢þ
>WENV181610699
OGLQ01001544
[OGLQ] metagenome; Human gut stool
1395
1319
-
fMet
CAT
[ENA]
¢þ
>WENV181649619
OGNS01006499
[OGNS] metagenome; Human gut stool
1393
1317
-
fMet
CAT
[ENA]
¢þ
>WENV181693239
OGPA01004806
[OGPA] human gut metagenome; faeces
7017
7093
+
fMet
CAT
[ENA]
¢þ
>WENV181731907
OGQD01005769
[OGQD] human gut metagenome; faeces
76
1
-
fMet
CAT
[ENA]
¢þ
>WENV181746020
OGQN01000153
[OGQN] human gut metagenome; faeces
66416
66489
+
fMet
CAT
[ENA]
¢þ
>WENV181798460
OGRV01000440
[OGRV] human gut metagenome; fecal sample 3 from infant 4
225
149
-
fMet
CAT
[ENA]
¢þ
>WENV182461631
OINT01003325
[OINT] human gut metagenome; human gut
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV182499992
OITW01017189
[OITW] human gut metagenome; human gut
644
568
-
fMet
CAT
[ENA]
¢þ
>WENV182524073
OIWT01000031
[OIWT] human gut metagenome; faeces
75651
75727
+
fMet
CAT
[ENA]
¢þ
>WENV182528123
OIWU01001742
[OIWU] human gut metagenome; faeces
3628
3704
+
fMet
CAT
[ENA]
¢þ
>WENV182718877
OJPM01002546
[OJPM] human gut metagenome; stool sample
185
109
-
fMet
CAT
[ENA]
¢þ
>WENV183015630
OLEP01007708
[OLEP] human gut metagenome; human gut
52
128
+
fMet
CAT
[ENA]
¢þ
>WENV183043909
OLGE01000146
[OLGE] human gut metagenome; faeces
34513
34589
+
fMet
CAT
[ENA]
¢þ
>WENV183557029
OOBP01000012
[OOBP] human gut metagenome; human gut
1347
1271
-
fMet
CAT
[ENA]
¢þ
>WENV183584876
OOCR01000216
[OOCR] human gut metagenome; human gut
53787
53711
-
fMet
CAT
[ENA]
¢þ
>WENV183639554
OQVI01021167
[OQVI] human gut metagenome; human gut
833
757
-
fMet
CAT
[ENA]
¢þ
>WENV170004602
AGTN01735778
[AGTN] bioreactor metagenome; poplar biomass
35
111
+
Met
CAT
[ENA]
¢þ
>W1930032039
NUEJ01000199
Bacillota
Bacillus pseudomycoides AFS004741 [NUEJ]
249
325
+
fMet
CAT
[ENA]
¡û
>C10102078
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
2194549
2194625
+
Met
CAT
[Ensembl]
¡û
>C10102105
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
325834
325758
-
Met
CAT
[Ensembl]
¡û
>W1510647469
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
3514648
3514724
+
Met
CAT
[ENA]
¡û
>W1510647514
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2091521
2091446
-
Met
CAT
[ENA]
¡û
>W1510647533
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
1965188
1965113
-
Met
CAT
[ENA]
¡û
>W1511402844
JTKJ01000023
Bacillota
Bacillus velezensis KACC 13105 [JTKJ]
594
670
+
Met
CAT
[ENA]
¡û
>W1511402865
JTKJ01000070
Bacillota
Bacillus velezensis KACC 13105 [JTKJ]
82
158
+
Met
CAT
[ENA]
¡û
>W1511402889
JTKJ01000078
Bacillota
Bacillus velezensis KACC 13105 [JTKJ]
41553
41477
-
Met
CAT
[ENA]
¡û
>W11137391
AEHM01000031
Bacillota
Bacillus subtilis gtP20b [AEHM]
53
129
+
Met
CAT
[ENA]
¡û
>W11137407
AEHM01000055
Bacillota
Bacillus subtilis gtP20b [AEHM]
621
545
-
Met
CAT
[ENA]
¡û
>W1511643817
LDWT01000005
Bacillota
Bacillus safensis LK32 [LDWT]
498421
498345
-
Met
CAT
[ENA]
¡û
>W1511643830
LDWT01000011
Bacillota
Bacillus safensis LK32 [LDWT]
155195
155119
-
Met
CAT
[ENA]
¡û
>W1511643836
LDWT01000015
Bacillota
Bacillus safensis LK32 [LDWT]
638
714
+
Met
CAT
[ENA]
¡û
>W1511643873
LDWU01000012
Bacillota
Bacillus stratosphericus LK33 [LDWU]
35985
35909
-
Met
CAT
[ENA]
¡û
>W1511643899
LDWU01000017
Bacillota
Bacillus stratosphericus LK33 [LDWU]
593
669
+
Met
CAT
[ENA]
¡û
>W1511643926
LDWU01000045
Bacillota
Bacillus stratosphericus LK33 [LDWU]
325
401
+
Met
CAT
[ENA]
¡û
>C121005026
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
358834
358910
+
Met
CAT
[Ensembl]
¡û
>W121005163
AFSI01000002
Bacillota
Bacillus mojavensis RO-H-1 [AFSI]
61590
61514
-
Met
CAT
[ENA]
¡û
>W121005208
AFSI01000012
Bacillota
Bacillus mojavensis RO-H-1 [AFSI]
4138
4214
+
Met
CAT
[ENA]
¡û
>W121005214
AFSI01000013
Bacillota
Bacillus mojavensis RO-H-1 [AFSI]
120168
120244
+
Met
CAT
[ENA]
¡û
>W121064008
AJLV01000016
Bacillota
Bacillus licheniformis 10-1-A [AJLV]
853
929
+
Met
CAT
[ENA]
¡û
>W121064031
AJLV01000018
Bacillota
Bacillus licheniformis 10-1-A [AJLV]
509261
509185
-
Met
CAT
[ENA]
¡û
>W121064058
AJLV01000028
Bacillota
Bacillus licheniformis 10-1-A [AJLV]
145219
145143
-
Met
CAT
[ENA]
¡û
>C131003161
CP003329
Bacillota
Bacillus subtilis subsp. subtilis 6051-HGW [CP003329]
640265
640341
+
Met
CAT
[Ensembl]
¡û
>C131003167
CP003329
Bacillota
Bacillus subtilis subsp. subtilis 6051-HGW [CP003329]
951951
952027
+
Met
CAT
[Ensembl]
¡û
>C131003200
CP003329
Bacillota
Bacillus subtilis subsp. subtilis 6051-HGW [CP003329]
3172658
3172582
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK