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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149294 (126 seq.)
>W1711094779
LTGG01000058
Betaproteobacteria
Eikenella sp. HMSC071B05 [LTGG]
2968
3044
+
Arg
TCT
[ENA]
¡û
>W1711099437
LTKM01000052
Betaproteobacteria
Eikenella sp. HMSC061C02 [LTKM]
15109
15185
+
Arg
TCT
[ENA]
¡û
>W1711107389
LTST01000013
Betaproteobacteria
Eikenella sp. HMSC073A11 [LTST]
20258
20182
-
Arg
TCT
[ENA]
¡û
>W1711185387
LWNI01000057
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
40030
40106
+
Arg
TCT
[ENA]
¡û
>W1711222612
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40561
40637
+
Arg
TCT
[ENA]
¡û
>W1711222644
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
71014
71090
+
Arg
TCT
[ENA]
¡û
>W1711222705
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21138
21062
-
Arg
TCT
[ENA]
¡û
>W1711222751
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24556
24480
-
Arg
TCT
[ENA]
¡û
>W1711222781
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14301
14377
+
Arg
TCT
[ENA]
¡û
>W1711222825
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3163
3239
+
Arg
TCT
[ENA]
¡û
>W1711222867
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114878
114802
-
Arg
TCT
[ENA]
¡û
>W1711222893
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127726
127650
-
Arg
TCT
[ENA]
¡û
>W1711222943
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144225
144301
+
Arg
TCT
[ENA]
¡û
>W1711223056
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116084
116008
-
Arg
TCT
[ENA]
¡û
>W1711223095
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116551
116475
-
Arg
TCT
[ENA]
¡û
>W1711223119
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71675
71599
-
Arg
TCT
[ENA]
¡û
>W1711223154
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34251
34327
+
Arg
TCT
[ENA]
¡û
>W1711223200
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114714
114638
-
Arg
TCT
[ENA]
¡û
>W1711223255
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115651
115727
+
Arg
TCT
[ENA]
¡û
>W1711710945
MTAA01000003
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
86961
87037
+
Arg
TCT
[ENA]
¡û
>W1711710989
MTAB01000002
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
85204
85280
+
Arg
TCT
[ENA]
¡û
>W1711711041
MTAC01000004
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
45298
45222
-
Arg
TCT
[ENA]
¡û
>W1711712078
MTBM01000014
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
35629
35705
+
Arg
TCT
[ENA]
¡û
>W1711712090
MTBN01000001
Betaproteobacteria
Neisseria animaloris [MTBN]
58104
58180
+
Arg
TCT
[ENA]
¡û
>W1711712149
MTBO01000005
Betaproteobacteria
Neisseria dentiae [MTBO]
35385
35461
+
Arg
TCT
[ENA]
¡û
>W1712084756
NHRS01000001
Betaproteobacteria
Eikenella corrodens [NHRS]
205899
205975
+
Arg
TCT
[ENA]
¡û
>WENV180006716
FLRY01247992
[FLRY] metagenome; saliva
77
1
-
Arg
TCT
[ENA]
¢þ
>WENV180010201
FLSC01401035
[FLSC] metagenome; saliva
75
-1
-
Arg
TCT
[ENA]
¢þ
>W141042666
AMER01000110
Betaproteobacteria
Neisseria sp. oral taxon 020 oral taxon 020 str. F0370 [AMER]
5130
5054
-
Arg
TCT
[ENA]
¡û
>WENV180589915
OCOS01038694
[OCOS] marine metagenome; Sterile flask
111
35
-
Arg
TCT
[ENA]
¢þ
>WENV180697580
ODDE01001591
[ODDE] human metagenome; G_DNA_Supragingival plaque
1959
2035
+
Arg
TCT
[ENA]
¢þ
>WENV180727385
ODGU01004822
[ODGU] human metagenome; G_DNA_Supragingival plaque
2662
2738
+
Arg
TCT
[ENA]
¢þ
>WENV180736208
ODHB01009819
[ODHB] human metagenome; G_DNA_Supragingival plaque
1546
1470
-
Arg
TCT
[ENA]
¢þ
>WENV180750683
ODHS01005502
[ODHS] human metagenome; G_DNA_Supragingival plaque
1930
1854
-
Arg
TCT
[ENA]
¢þ
>WENV180765198
ODIB01037257
[ODIB] human metagenome; G_DNA_Supragingival plaque
89
165
+
Arg
TCT
[ENA]
¢þ
>WENV180778569
ODIM01016061
[ODIM] human metagenome; G_DNA_Supragingival plaque
361
285
-
Arg
TCT
[ENA]
¢þ
>WENV180788272
ODIS01043187
[ODIS] human metagenome; G_DNA_Supragingival plaque
1109
1033
-
Arg
TCT
[ENA]
¢þ
>WENV180795851
ODJB01000419
[ODJB] human metagenome; G_DNA_Supragingival plaque
8970
9046
+
Arg
TCT
[ENA]
¢þ
>WENV180801181
ODJD01011758
[ODJD] human metagenome; G_DNA_Supragingival plaque
1189
1265
+
Arg
TCT
[ENA]
¢þ
>WENV180807810
ODJI01011530
[ODJI] human metagenome; G_DNA_Tongue dorsum
1836
1760
-
Arg
TCT
[ENA]
¢þ
>WENV180814422
ODJO01016160
[ODJO] human metagenome; G_DNA_Supragingival plaque
2273
2349
+
Arg
TCT
[ENA]
¢þ
>WENV180824436
ODJX01006953
[ODJX] human metagenome; G_DNA_Supragingival plaque
219
143
-
Arg
TCT
[ENA]
¢þ
>WENV180832524
ODKC01002066
[ODKC] human metagenome; G_DNA_Supragingival plaque
11091
11015
-
Arg
TCT
[ENA]
¢þ
>WENV180834237
ODKD01007294
[ODKD] human metagenome; G_DNA_Supragingival plaque
1958
2034
+
Arg
TCT
[ENA]
¢þ
>WENV180836358
ODKE01135818
[ODKE] human metagenome; G_DNA_Supragingival plaque
72
148
+
Arg
TCT
[ENA]
¢þ
>WENV180846333
ODKT01009077
[ODKT] human metagenome; G_DNA_Supragingival plaque
99
175
+
Arg
TCT
[ENA]
¢þ
>WENV180859359
ODLD01000480
[ODLD] human metagenome; G_DNA_Supragingival plaque
12895
12819
-
Arg
TCT
[ENA]
¢þ
>WENV180861487
ODLE01004578
[ODLE] human metagenome; G_DNA_Tongue dorsum
2539
2615
+
Arg
TCT
[ENA]
¢þ
>WENV180875396
ODLQ01132225
[ODLQ] human metagenome; G_DNA_Tongue dorsum
193
117
-
Arg
TCT
[ENA]
¢þ
>WENV180888721
ODMN01002983
[ODMN] human metagenome; G_DNA_Supragingival plaque
4884
4960
+
Arg
TCT
[ENA]
¢þ
>WENV180922229
ODTJ01002008
[ODTJ] human metagenome; G_DNA_Supragingival plaque
10887
10811
-
Arg
TCT
[ENA]
¢þ
>WENV180943866
ODUC01003509
[ODUC] human metagenome; G_DNA_Supragingival plaque
4492
4416
-
Arg
TCT
[ENA]
¢þ
>WENV180958174
ODUL01000845
[ODUL] human metagenome; G_DNA_Supragingival plaque
11349
11425
+
Arg
TCT
[ENA]
¢þ
>WENV180972984
ODUW01000721
[ODUW] human metagenome; G_DNA_Supragingival plaque
2370
2294
-
Arg
TCT
[ENA]
¢þ
>WENV180980915
ODVE01003377
[ODVE] human metagenome; G_DNA_Supragingival plaque
333
257
-
Arg
TCT
[ENA]
¢þ
>WENV180986600
ODVK01000144
[ODVK] human metagenome; G_DNA_Supragingival plaque
35055
34979
-
Arg
TCT
[ENA]
¢þ
>WENV181009751
ODWE01187706
[ODWE] human metagenome; G_DNA_Supragingival plaque
94
170
+
Arg
TCT
[ENA]
¢þ
>WENV181029921
ODXF01010007
[ODXF] human metagenome; G_DNA_Supragingival plaque
1553
1477
-
Arg
TCT
[ENA]
¢þ
>WENV181050230
ODYD01009418
[ODYD] human metagenome; G_DNA_Supragingival plaque
1248
1324
+
Arg
TCT
[ENA]
¢þ
>WENV181070263
OEAE01000551
[OEAE] human metagenome; G_DNA_Supragingival plaque
23617
23541
-
Arg
TCT
[ENA]
¢þ
>WENV181077896
OEAP01218807
[OEAP] human metagenome; G_DNA_Supragingival plaque
133
57
-
Arg
TCT
[ENA]
¢þ
>WENV181107102
OEEI01002080
[OEEI] human metagenome; G_DNA_Supragingival plaque
89
165
+
Arg
TCT
[ENA]
¢þ
>WENV181143214
OEHM01000251
[OEHM] human metagenome; G_DNA_Supragingival plaque
26686
26762
+
Arg
TCT
[ENA]
¢þ
>WENV181146825
OEHQ01027851
[OEHQ] human metagenome; G_DNA_Supragingival plaque
149
73
-
Arg
TCT
[ENA]
¢þ
>WENV181153601
OEIA01158839
[OEIA] human metagenome; G_DNA_Supragingival plaque
175
99
-
Arg
TCT
[ENA]
¢þ
>WENV181156792
OEIE01114317
[OEIE] human metagenome; G_DNA_Supragingival plaque
191
115
-
Arg
TCT
[ENA]
¢þ
>WENV181158696
OEIH01006324
[OEIH] human metagenome; G_DNA_Supragingival plaque
229
153
-
Arg
TCT
[ENA]
¢þ
>WENV181179664
OEJT01011054
[OEJT] human metagenome; G_DNA_Supragingival plaque
150
74
-
Arg
TCT
[ENA]
¢þ
>WENV181183096
OEJV01186602
[OEJV] human metagenome; G_DNA_Supragingival plaque
89
165
+
Arg
TCT
[ENA]
¢þ
>W141202106
AZGQ01000004
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
189130
189206
+
Arg
TCT
[ENA]
¡û
>WENV183508157
OMHB01002792
[OMHB] human oral metagenome; human oral
190
114
-
Arg
TCT
[ENA]
¢þ
>WENV183508240
OMHC01000328
[OMHC] human oral metagenome; human oral
4398
4474
+
Arg
TCT
[ENA]
¢þ
>WENV183508395
OMHD01000020
[OMHD] human oral metagenome; human oral
755
831
+
Arg
TCT
[ENA]
¢þ
>WENV183509191
OMHH01000111
[OMHH] human oral metagenome; human oral
1970
2046
+
Arg
TCT
[ENA]
¢þ
>WENV183509544
OMHI01011095
[OMHI] human oral metagenome; human oral
453
529
+
Arg
TCT
[ENA]
¢þ
>WENV170146909
CENZ01093719
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
22998
23074
+
Arg
TCT
[ENA]
¢þ
>WENV170324172
CESS01057295
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
277
+
Arg
TCT
[ENA]
¢þ
>WENV170871749
MDTB01209888
[MDTB] marine metagenome; seawater
21802
21726
-
Arg
TCT
[ENA]
¢þ
>C181067643
CP022527
Betaproteobacteria
Neisseria sp. KEM232 [CP022527]
856633
856557
-
Arg
TCT
-
¡û
>C181198255
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
1255360
1255284
-
Arg
TCT
-
¡û
>C181198399
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
637545
637621
+
Arg
TCT
-
¡û
>C181213225
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
272206
272130
-
Arg
TCT
-
¡û
>C181224092
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
74874
74950
+
Arg
TCT
-
¡û
>C181226766
LT906482
Betaproteobacteria
Eikenella corrodens NCTC10596 [LT906482]
397712
397788
+
Arg
TCT
-
¡û
>C191128742
CP034670
Betaproteobacteria
Eikenella corrodens KCOM 3110 [CP034670]
2014694
2014618
-
Arg
TCT
-
¡û
>C191211120
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1243232
1243156
-
Arg
TCT
-
¡û
>C191213623
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
103744
103820
+
Arg
TCT
-
¡û
>W09119690
ACEA01000012
Betaproteobacteria
Eikenella corrodens ATCC 23834 [ACEA]
40569
40645
+
Arg
TCT
[ENA]
¡û
>W1810227354
POXH01000002
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
122305
122381
+
Arg
TCT
[ENA]
¡û
>W1810227463
POXJ01000003
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
164884
164808
-
Arg
TCT
[ENA]
¡û
>W1810227862
POXR01000001
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
340324
340400
+
Arg
TCT
[ENA]
¡û
>W1810227916
POXS01000001
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
265539
265463
-
Arg
TCT
[ENA]
¡û
>W1810228076
POXV01000003
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
118914
118990
+
Arg
TCT
[ENA]
¡û
>W1810228249
POXY01000004
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
176028
176104
+
Arg
TCT
[ENA]
¡û
>W1810228440
POYC01000002
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
295328
295404
+
Arg
TCT
[ENA]
¡û
>C151033121
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
2095012
2094936
-
Arg
TCT
[Ensembl]
¡û
>W10109812
ADBF01000229
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
43253
43329
+
Arg
TCT
[ENA]
¡û
>W11112199
ADBF01000229
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
43253
43329
+
Arg
TCT
[ENA]
¡û
>W1511398420
JTDO01000024
Betaproteobacteria
Neisseria arctica KH1503 [JTDO]
19614
19538
-
Arg
TCT
[ENA]
¡û
>W1511439620
JUOC01000006
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
19307
19231
-
Arg
TCT
[ENA]
¡û
>W1511453334
JVFA01000092
Betaproteobacteria
Eikenella corrodens 491_NMEN [JVFA]
45075
44999
-
Arg
TCT
[ENA]
¡û
>W1511456071
JVHH01000026
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
114218
114142
-
Arg
TCT
[ENA]
¡û
>W1511457666
JVIM01000011
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
166448
166372
-
Arg
TCT
[ENA]
¡û
>W1511464693
JVQC01000062
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
29259
29335
+
Arg
TCT
[ENA]
¡û
>W1511469683
JVVT01000037
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
43578
43654
+
Arg
TCT
[ENA]
¡û
>W11156185
AFAY01000003
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
77605
77529
-
Arg
TCT
[ENA]
¡û
>W11177476
AGAY01000056
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
32601
32525
-
Arg
TCT
[ENA]
¡û
>W11177531
AGAZ01000067
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
12684
12608
-
Arg
TCT
[ENA]
¡û
>W1610617976
LGZA01000005
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
71664
71588
-
Arg
TCT
[ENA]
¡û
>W1611007025
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40561
40637
+
Arg
TCT
[ENA]
¡û
>W1611007057
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
71014
71090
+
Arg
TCT
[ENA]
¡û
>W1611007118
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21138
21062
-
Arg
TCT
[ENA]
¡û
>W1611007164
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24556
24480
-
Arg
TCT
[ENA]
¡û
>W1611007194
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14301
14377
+
Arg
TCT
[ENA]
¡û
>W1611007238
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3163
3239
+
Arg
TCT
[ENA]
¡û
>W1611007280
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114878
114802
-
Arg
TCT
[ENA]
¡û
>W1611007306
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127726
127650
-
Arg
TCT
[ENA]
¡û
>W1611007356
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144225
144301
+
Arg
TCT
[ENA]
¡û
>W1611007469
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116084
116008
-
Arg
TCT
[ENA]
¡û
>W1611007508
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116551
116475
-
Arg
TCT
[ENA]
¡û
>W1611007532
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71675
71599
-
Arg
TCT
[ENA]
¡û
>W1611007567
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34251
34327
+
Arg
TCT
[ENA]
¡û
>W1611007613
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114714
114638
-
Arg
TCT
[ENA]
¡û
>W1611007668
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115651
115727
+
Arg
TCT
[ENA]
¡û
>W1710563484
FOPS01000002
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
256354
256430
+
Arg
TCT
[ENA]
¡û
>W1710744151
LGZA01000005
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
71664
71588
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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