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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149518 (85 seq.)
>W1710979345
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
294885
294961
+
Gly
TCC
[ENA]
¡û
>W1710979363
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249575
249499
-
Gly
TCC
[ENA]
¡û
>W1711484269
MKCO01000003
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
343519
343594
+
Gly
TCC
[ENA]
¡û
>W1711484273
MKCO01000004
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
17029
17105
+
Gly
TCC
[ENA]
¡û
>W1711484284
MKCO01000012
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
76
1
-
Gly
TCC
[ENA]
¡û
>W1711484287
MKCO01000015
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
282
358
+
Gly
TCC
[ENA]
¡û
>W1711484290
MKCO01000016
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
29287
29363
+
Gly
TCC
[ENA]
¡û
>W1711484291
MKCO01000016
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
29423
29496
+
Gly
TCC
[ENA]
¡û
>W1711484315
MKCO01000423
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
2
78
+
Gly
TCC
[ENA]
¡û
>C171088954
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
252624
252700
+
Gly
TCC
-
¡û
>C171088965
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2367342
2367266
-
Gly
TCC
-
¡û
>C171088971
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013712
2013636
-
Gly
TCC
-
¡û
>C171088972
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013580
2013504
-
Gly
TCC
-
¡û
>WENV180332779
OBLD01136981
[OBLD] metagenome; water
85
9
-
Gly
TCC
[ENA]
¢þ
>WENV180381189
OBOR01162098
[OBOR] marine metagenome; ENVO 00002227
222
298
+
Gly
TCC
[ENA]
¢þ
>WENV182555515
OJDB01001309
[OJDB] seawater metagenome; Sea water
1065
989
-
Gly
TCC
[ENA]
¢þ
>WENV182555523
OJDB01001309
[OJDB] seawater metagenome; Sea water
208
132
-
Gly
TCC
[ENA]
¢þ
>WENV182555524
OJDB01001309
[OJDB] seawater metagenome; Sea water
77
1
-
Gly
TCC
[ENA]
¢þ
>WENV182589148
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
5091
5015
-
Gly
TCC
[ENA]
¢þ
>WENV182590587
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
13686
13762
+
Gly
TCC
[ENA]
¢þ
>WENV182590594
OJIJ01000070
[OJIJ] seawater metagenome; Sea water
13555
13631
+
Gly
TCC
[ENA]
¢þ
>WENV183055599
OLHD01005049
[OLHD] seawater metagenome; Sea water
574
650
+
Gly
TCC
[ENA]
¢þ
>WENV183747758
PPCM01030734
[PPCM] marine sediment metagenome; marine sediment
322
246
-
Gly
TCC
[ENA]
¢þ
>WENV170573017
FLOH01003871
[FLOH] marine metagenome; water
48
124
+
Gly
TCC
[ENA]
¢þ
>WENV170573021
FLOH01003871
[FLOH] marine metagenome; water
548
624
+
Gly
TCC
[ENA]
¢þ
>WENV170610559
FUWD011946022
[FUWD] metagenome; unknown
307
231
-
Gly
TCC
[ENA]
¢þ
>WENV170635270
JDSF01000556
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
2908
2984
+
Gly
TCC
[ENA]
¢þ
>WENV170635282
JDSF01000777
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
4676
4752
+
Gly
TCC
[ENA]
¢þ
>WENV170635569
JDSG01000085
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
17389
17465
+
Gly
TCC
[ENA]
¢þ
>WENV170635584
JDSG01000184
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
10665
10589
-
Gly
TCC
[ENA]
¢þ
>WENV170646439
JQGR01004352
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
592
668
+
Gly
TCC
[ENA]
¢þ
>WENV170646453
JQGR01007194
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
495
419
-
Gly
TCC
[ENA]
¢þ
>WENV170704215
LLEJ01000027
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4271
4347
+
Gly
TCC
[ENA]
¢þ
>WENV170704300
LLEJ01002203
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
214
138
-
Gly
TCC
[ENA]
¢þ
>WENV170704301
LLEJ01002203
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
79
3
-
Gly
TCC
[ENA]
¢þ
>WENV170704324
LLEJ01003040
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
64
140
+
Gly
TCC
[ENA]
¢þ
>WENV170704326
LLEJ01003040
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
730
806
+
Gly
TCC
[ENA]
¢þ
>WENV170779316
LZQN01000359
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1293
1369
+
Gly
TCC
[ENA]
¢þ
>WENV170780793
MAAB01022570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
73
149
+
Gly
TCC
[ENA]
¢þ
>WENV170780794
MAAB01022570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
210
286
+
Gly
TCC
[ENA]
¢þ
>WENV170781364
MAAB01032690
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
691
615
-
Gly
TCC
[ENA]
¢þ
>WENV170782075
MAAC01008005
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1798
1874
+
Gly
TCC
[ENA]
¢þ
>WENV170782965
MAAC01012273
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7793
7869
+
Gly
TCC
[ENA]
¢þ
>WENV170782970
MAAC01012278
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4835
4759
-
Gly
TCC
[ENA]
¢þ
>WENV170930574
MDTG01169776
[MDTG] marine metagenome; seawater
308
232
-
Gly
TCC
[ENA]
¢þ
>WENV170930575
MDTG01169776
[MDTG] marine metagenome; seawater
176
100
-
Gly
TCC
[ENA]
¢þ
>C191084470
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180376
180452
+
Gly
TCC
-
¡û
>C191084471
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180488
180564
+
Gly
TCC
-
¡û
>C191084472
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180593
180669
+
Gly
TCC
-
¡û
>C191084496
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2311167
2311091
-
Gly
TCC
-
¡û
>C191186393
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
310213
310289
+
Gly
TCC
-
¡û
>C191186410
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2491907
2491831
-
Gly
TCC
-
¡û
>C191186417
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2152030
2151954
-
Gly
TCC
-
¡û
>W1911424191
NXFY01000025
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
18918
18842
-
Gly
TCC
[ENA]
¡û
>W1911424195
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
3461
3385
-
Gly
TCC
[ENA]
¡û
>W1911424196
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
3349
3273
-
Gly
TCC
[ENA]
¡û
>W1911424197
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
3244
3168
-
Gly
TCC
[ENA]
¡û
>W1911426237
NXIE01000004
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
180710
180786
+
Gly
TCC
[ENA]
¡û
>W1911576288
PDJX01000004
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
169960
169884
-
Gly
TCC
[ENA]
¡û
>W1911576318
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19200
19276
+
Gly
TCC
[ENA]
¡û
>W1911576319
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19312
19388
+
Gly
TCC
[ENA]
¡û
>W1911576320
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19417
19493
+
Gly
TCC
[ENA]
¡û
>W1911576659
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
280530
280454
-
Gly
TCC
[ENA]
¡û
>W1911576684
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
19187
19263
+
Gly
TCC
[ENA]
¡û
>W1911576685
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
19298
19374
+
Gly
TCC
[ENA]
¡û
>W1911576686
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
19401
19477
+
Gly
TCC
[ENA]
¡û
>W1911576977
PDKN01000008
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
51602
51678
+
Gly
TCC
[ENA]
¡û
>W1911576990
PDKO01000001
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
488269
488193
-
Gly
TCC
[ENA]
¡û
>W1911577000
PDKO01000002
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
314650
314726
+
Gly
TCC
[ENA]
¡û
>W1911577009
PDKO01000006
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
148532
148456
-
Gly
TCC
[ENA]
¡û
>W1911717870
QQTC01000053
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
6319
6243
-
Gly
TCC
[ENA]
¡û
>W1810462568
PZYW01000004
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
342155
342231
+
Gly
TCC
[ENA]
¡û
>W1810462573
PZYW01000005
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
17023
17099
+
Gly
TCC
[ENA]
¡û
>W1810462592
PZYW01000016
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
1
77
+
Gly
TCC
[ENA]
¡û
>W1830009756
PZYW01000081
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
210
134
-
Gly
TCC
[ENA]
¡û
>W1511517377
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
1302775
1302699
-
Gly
TCC
[ENA]
¡û
>W1511517385
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
254894
254970
+
Gly
TCC
[ENA]
¡û
>W1511517392
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
593687
593763
+
Gly
TCC
[ENA]
¡û
>W1511517393
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
598680
598756
+
Gly
TCC
[ENA]
¡û
>W1610835336
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
294885
294961
+
Gly
TCC
[ENA]
¡û
>W1610835354
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249575
249499
-
Gly
TCC
[ENA]
¡û
>W1710082871
BDIR01000015
Campylobacterota
Arcobacter sp. LA11 [BDIR]
72526
72450
-
Gly
TCC
[ENA]
¡û
>W1710082872
BDIR01000015
Campylobacterota
Arcobacter sp. LA11 [BDIR]
72389
72313
-
Gly
TCC
[ENA]
¡û
>W1710082873
BDIR01000015
Campylobacterota
Arcobacter sp. LA11 [BDIR]
71326
71250
-
Gly
TCC
[ENA]
¡û
>W1710082878
BDIR01000017
Campylobacterota
Arcobacter sp. LA11 [BDIR]
15736
15660
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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