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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149527 (30 seq.)
>W1710979364
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249461
249385
-
Met
CAT
[ENA]
¡û
>WENV183702768
PDVJ01000075
[PDVJ] alkali sediment metagenome; glacial lake sediment
22857
22933
+
fMet
CAT
[ENA]
¢þ
>WENV183703256
PDVJ01006728
[PDVJ] alkali sediment metagenome; glacial lake sediment
895
819
-
fMet
CAT
[ENA]
¢þ
>WENV183703974
PDVJ01080320
[PDVJ] alkali sediment metagenome; glacial lake sediment
109
185
+
fMet
CAT
[ENA]
¢þ
>WENV170704295
LLEJ01002099
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1506
1430
-
Met
CAT
[ENA]
¢þ
>WENV170779360
LZQN01002695
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
823
747
-
Met
CAT
[ENA]
¢þ
>C191186421
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
1556395
1556319
-
Met
CAT
-
¡û
>W1910744440
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12799
12875
+
Met
CAT
[ENA]
¡û
>W1910744441
MIBO01000440
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
12925
13001
+
Met
CAT
[ENA]
¡û
>W1910744462
MIBP01000712
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
4267
4343
+
Met
CAT
[ENA]
¡û
>W1910744514
MIBS01000404
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_43_5 [MIBS]
916
840
-
Met
CAT
[ENA]
¡û
>W1910744545
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6214
6290
+
Met
CAT
[ENA]
¡û
>W1910744546
MIBT01000101
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
6339
6415
+
Met
CAT
[ENA]
¡û
>W1911576175
PDJV01000001
Campylobacterota
Arcobacter sp. F2176 [PDJV]
200785
200709
-
Met
CAT
[ENA]
¡û
>W1911576180
PDJV01000002
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256737
256661
-
Met
CAT
[ENA]
¡û
>W1911576210
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
62189
62265
+
Met
CAT
[ENA]
¡û
>W1911576211
PDJV01000009
Campylobacterota
Arcobacter sp. F2176 [PDJV]
66489
66565
+
Met
CAT
[ENA]
¡û
>W1911576776
PDKJ01000001
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
277228
277304
+
Met
CAT
[ENA]
¡û
>W1911576834
PDKK01000010
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
12932
13008
+
Met
CAT
[ENA]
¡û
>W1911576953
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
162562
162486
-
Met
CAT
[ENA]
¡û
>W1911576956
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
162255
162179
-
Met
CAT
[ENA]
¡û
>W1911577003
PDKO01000003
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
154859
154783
-
Met
CAT
[ENA]
¡û
>C10100551
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
303816
303892
+
Met
CAT
[Ensembl]
¡û
>C10100552
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
317454
317530
+
Met
CAT
[Ensembl]
¡û
>C10100560
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2695915
2695991
+
Met
CAT
[Ensembl]
¡û
>C10100587
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
1703913
1703837
-
Met
CAT
[Ensembl]
¡û
>W1511517360
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
103606
103682
+
Met
CAT
[ENA]
¡û
>C161002987
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1299286
1299362
+
Met
CAT
-
¡û
>C161002988
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1299411
1299487
+
Met
CAT
-
¡û
>W1610835355
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249461
249385
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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