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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149578 (100 seq.)
>W131144676
AQFP01000003
Gammaproteobacteria
Pseudomonas sp. HPB0071 [AQFP]
115427
115351
-
Arg
ACG
[ENA]
¡û
>W131144677
AQFP01000003
Gammaproteobacteria
Pseudomonas sp. HPB0071 [AQFP]
115282
115206
-
Arg
ACG
[ENA]
¡û
>W131144715
AQFP01000016
Gammaproteobacteria
Pseudomonas sp. HPB0071 [AQFP]
30352
30276
-
Arg
ACG
[ENA]
¡û
>WENV180113678
OAPR01007479
[OAPR] marine metagenome; seawater
768
844
+
Arg
ACG
[ENA]
¢þ
>WENV180242344
OBDI01193816
[OBDI] metagenome; diffuse fluid
102
178
+
Arg
ACG
[ENA]
¢þ
>WENV180299778
OBJC01118221
[OBJC] metagenome; water
29
105
+
Arg
ACG
[ENA]
¢þ
>WENV180356711
OBNL01011531
[OBNL] marine metagenome; ENVO:00002010
235
311
+
Arg
ACG
[ENA]
¢þ
>WENV180396376
OBPV01000704
[OBPV] marine metagenome; ENVO:00002010
1232
1156
-
Arg
ACG
[ENA]
¢þ
>WENV180583181
OCNB01008562
[OCNB] metagenome; diffuse fluid
701
625
-
Arg
ACG
[ENA]
¢þ
>WENV180585113
OCOK01004041
[OCOK] marine metagenome; ENVO:00002010
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV180590379
OCOT01004187
[OCOT] marine metagenome; ENVO:00002010
318
242
-
Arg
ACG
[ENA]
¢þ
>WENV181313869
OFJH01017200
[OFJH] marine metagenome; seawater
124
200
+
Arg
ACG
[ENA]
¢þ
>WENV181319219
OFKD01000457
[OFKD] marine metagenome; seawater
1417
1341
-
Arg
ACG
[ENA]
¢þ
>WENV181325461
OFLJ01000923
[OFLJ] seawater metagenome; seawater
3263
3187
-
Arg
ACG
[ENA]
¢þ
>WENV181391550
OFRT01021321
[OFRT] seawater metagenome; seawater
544
468
-
Arg
ACG
[ENA]
¢þ
>WENV181392151
OFRW01005164
[OFRW] seawater metagenome; seawater
396
472
+
Arg
ACG
[ENA]
¢þ
>WENV181392695
OFRX01001931
[OFRX] seawater metagenome; seawater
1340
1416
+
Arg
ACG
[ENA]
¢þ
>WENV182540549
OJAJ01011487
[OJAJ] seawater metagenome; Sea water
180
104
-
Arg
ACG
[ENA]
¢þ
>WENV182541273
OJAT01000594
[OJAT] seawater metagenome; Sea water
1262
1186
-
Arg
ACG
[ENA]
¢þ
>WENV182543207
OJBA01004031
[OJBA] seawater metagenome; Sea water
1526
1450
-
Arg
ACG
[ENA]
¢þ
>WENV182548039
OJBV01000024
[OJBV] seawater metagenome; Sea water
1591
1515
-
Arg
ACG
[ENA]
¢þ
>WENV182548057
OJBV01000058
[OJBV] seawater metagenome; Sea water
13761
13837
+
Arg
ACG
[ENA]
¢þ
>WENV182550301
OJCA01000045
[OJCA] seawater metagenome; Sea water
17310
17386
+
Arg
ACG
[ENA]
¢þ
>WENV182551227
OJCC01000046
[OJCC] seawater metagenome; Sea water
10321
10397
+
Arg
ACG
[ENA]
¢þ
>WENV182551259
OJCC01000208
[OJCC] seawater metagenome; Sea water
3153
3229
+
Arg
ACG
[ENA]
¢þ
>WENV182551557
OJCD01001412
[OJCD] seawater metagenome; Sea water
217
141
-
Arg
ACG
[ENA]
¢þ
>WENV182552650
OJCN01000964
[OJCN] seawater metagenome; Sea water
547
623
+
Arg
ACG
[ENA]
¢þ
>WENV182554166
OJCT01006472
[OJCT] seawater metagenome; Sea water
575
651
+
Arg
ACG
[ENA]
¢þ
>WENV182562752
OJEA01001148
[OJEA] seawater metagenome; Sea water
1064
1140
+
Arg
ACG
[ENA]
¢þ
>WENV182563478
OJEC01000970
[OJEC] seawater metagenome; Sea water
884
808
-
Arg
ACG
[ENA]
¢þ
>WENV182565230
OJEH01000590
[OJEH] seawater metagenome; Sea water
10618
10694
+
Arg
ACG
[ENA]
¢þ
>WENV182568465
OJEU01001396
[OJEU] seawater metagenome; Sea water
848
924
+
Arg
ACG
[ENA]
¢þ
>WENV182569383
OJEZ01000031
[OJEZ] seawater metagenome; Sea water
11063
11139
+
Arg
ACG
[ENA]
¢þ
>WENV182570234
OJFC01000231
[OJFC] seawater metagenome; Sea water
11046
11122
+
Arg
ACG
[ENA]
¢þ
>WENV182570734
OJFF01000081
[OJFF] seawater metagenome; Sea water
1231
1307
+
Arg
ACG
[ENA]
¢þ
>WENV182570790
OJFF01000923
[OJFF] seawater metagenome; Sea water
668
592
-
Arg
ACG
[ENA]
¢þ
>WENV182571496
OJFK01000148
[OJFK] seawater metagenome; Sea water
11177
11253
+
Arg
ACG
[ENA]
¢þ
>WENV182571499
OJFK01000172
[OJFK] seawater metagenome; Sea water
6320
6244
-
Arg
ACG
[ENA]
¢þ
>WENV182578376
OJGN01002042
[OJGN] seawater metagenome; Sea water
537
461
-
Arg
ACG
[ENA]
¢þ
>WENV182583847
OJHF01000112
[OJHF] seawater metagenome; Sea water
13628
13552
-
Arg
ACG
[ENA]
¢þ
>WENV182587142
OJHL01003215
[OJHL] seawater metagenome; Sea water
679
755
+
Arg
ACG
[ENA]
¢þ
>WENV182589510
OJID01008302
[OJID] seawater metagenome; Sea water
125
49
-
Arg
ACG
[ENA]
¢þ
>WENV182589702
OJIG01000038
[OJIG] seawater metagenome; Sea water
10981
11057
+
Arg
ACG
[ENA]
¢þ
>WENV182589810
OJIG01001079
[OJIG] seawater metagenome; Sea water
1832
1908
+
Arg
ACG
[ENA]
¢þ
>WENV182592139
OJIQ01000329
[OJIQ] seawater metagenome; Sea water
3587
3663
+
Arg
ACG
[ENA]
¢þ
>WENV182594303
OJIV01003533
[OJIV] seawater metagenome; Sea water
31
107
+
Arg
ACG
[ENA]
¢þ
>WENV183056018
OLHH01021494
[OLHH] seawater metagenome; Sea water
587
663
+
Arg
ACG
[ENA]
¢þ
>WENV183058458
OLHR01000137
[OLHR] seawater metagenome; Sea water
16599
16523
-
Arg
ACG
[ENA]
¢þ
>WENV183060392
OLHX01007171
[OLHX] seawater metagenome; Sea water
698
622
-
Arg
ACG
[ENA]
¢þ
>WENV183061277
OLHZ01002549
[OLHZ] seawater metagenome; Sea water
1836
1760
-
Arg
ACG
[ENA]
¢þ
>WENV183616651
OOED01115945
[OOED] marine metagenome; seawater
251
175
-
Arg
ACG
[ENA]
¢þ
>WENV183617926
OOFK01003116
[OOFK] marine metagenome; seawater
189
113
-
Arg
ACG
[ENA]
¢þ
>WENV183619055
OOFP01020849
[OOFP] marine metagenome; seawater
549
473
-
Arg
ACG
[ENA]
¢þ
>WENV183619113
OOFP01028407
[OOFP] marine metagenome; seawater
544
468
-
Arg
ACG
[ENA]
¢þ
>WENV183619312
OOFQ01000890
[OOFQ] marine metagenome; seawater
3310
3234
-
Arg
ACG
[ENA]
¢þ
>WENV183620384
OOFR01046305
[OOFR] marine metagenome; seawater
520
444
-
Arg
ACG
[ENA]
¢þ
>WENV183621638
OOFU01020771
[OOFU] marine metagenome; sea ice
506
430
-
Arg
ACG
[ENA]
¢þ
>WENV183625090
OOGF01000546
[OOGF] marine metagenome; seawater
3046
3122
+
Arg
ACG
[ENA]
¢þ
>WENV183626841
OOGK01003863
[OOGK] marine metagenome; seawater
552
628
+
Arg
ACG
[ENA]
¢þ
>WENV183629044
OOGP01001793
[OOGP] marine metagenome; seawater
1366
1442
+
Arg
ACG
[ENA]
¢þ
>WENV183630142
OOGR01025325
[OOGR] marine metagenome; seawater
118
194
+
Arg
ACG
[ENA]
¢þ
>WENV183630377
OOGS01007534
[OOGS] marine metagenome; seawater
723
647
-
Arg
ACG
[ENA]
¢þ
>WENV170325606
CEST01034302
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1031
1107
+
Arg
ACG
[ENA]
¢þ
>WENV170537778
CEWR01027860
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
78
-
Arg
ACG
[ENA]
¢þ
>WENV170567520
FLMP01001505
[FLMP] seawater metagenome; seawater
6276
6352
+
Arg
ACG
[ENA]
¢þ
>WENV170568261
FLMP01025717
[FLMP] seawater metagenome; seawater
875
799
-
Arg
ACG
[ENA]
¢þ
>WENV170568289
FLMP01027794
[FLMP] seawater metagenome; seawater
107
183
+
Arg
ACG
[ENA]
¢þ
>WENV170569068
FLMP01117234
[FLMP] seawater metagenome; seawater
752
676
-
Arg
ACG
[ENA]
¢þ
>WENV170599198
FUWD010066587
[FUWD] metagenome; unknown
289
213
-
Arg
ACG
[ENA]
¢þ
>WENV170613208
FUWD012789703
[FUWD] metagenome; unknown
228
304
+
Arg
ACG
[ENA]
¢þ
>WENV170820492
MDSY01005666
[MDSY] marine metagenome; seawater
12195
12271
+
Arg
ACG
[ENA]
¢þ
>WENV170821076
MDSY01015826
[MDSY] marine metagenome; seawater
15
91
+
Arg
ACG
[ENA]
¢þ
>WENV170950316
MEHZ011490453
[MEHZ] marine metagenome; marine surface water
213
289
+
Arg
ACG
[ENA]
¢þ
>WENV170953156
MEHZ011631536
[MEHZ] marine metagenome; marine surface water
1161
1237
+
Arg
ACG
[ENA]
¢þ
>WENV170953292
MEHZ011638839
[MEHZ] marine metagenome; marine surface water
15
91
+
Arg
ACG
[ENA]
¢þ
>WENV170953401
MEHZ011643560
[MEHZ] marine metagenome; marine surface water
81
5
-
Arg
ACG
[ENA]
¢þ
>WENV170953526
MEHZ011650684
[MEHZ] marine metagenome; marine surface water
770
694
-
Arg
ACG
[ENA]
¢þ
>C181178984
CP029478
Gammaproteobacteria
Gammaproteobacteria bacterium ESL0073 [CP029478]
3029084
3029160
+
Arg
ACG
-
¡û
>C181178985
CP029478
Gammaproteobacteria
Gammaproteobacteria bacterium ESL0073 [CP029478]
3029196
3029272
+
Arg
ACG
-
¡û
>C191065634
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
2922394
2922318
-
Arg
ACG
-
¡û
>C191065635
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
2922282
2922206
-
Arg
ACG
-
¡û
>C191100928
CP033105
Gammaproteobacteria
Pseudomonas sp. LTJR-52 [CP033105]
1951129
1951205
+
Arg
ACG
-
¡û
>C191100929
CP033105
Gammaproteobacteria
Pseudomonas sp. LTJR-52 [CP033105]
1951274
1951350
+
Arg
ACG
-
¡û
>C191100950
CP033105
Gammaproteobacteria
Pseudomonas sp. LTJR-52 [CP033105]
4656132
4656208
+
Arg
ACG
-
¡û
>ENV09003948
ADIF01001445
Marine metagenome apSum_C1
1175
1251
+
Arg
ACG
[ENA]
¡û
>ENV09003962
ADIF01003780
Marine metagenome apSum_C1
660
584
-
Arg
ACG
[ENA]
¡û
>W1511576964
LAQF01000025
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
58754
58830
+
Arg
ACG
[ENA]
¡û
>W1511576981
LAQF01000066
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
12194
12270
+
Arg
ACG
[ENA]
¡û
>W121104854
ALAT01000120
Gammaproteobacteria
Pseudomonas luteola XLDN4-9 [ALAT]
1825
1749
-
Arg
ACG
[ENA]
¡û
>W121104855
ALAT01000120
Gammaproteobacteria
Pseudomonas luteola XLDN4-9 [ALAT]
1680
1604
-
Arg
ACG
[ENA]
¡û
>W121104865
ALAT01000170
Gammaproteobacteria
Pseudomonas luteola XLDN4-9 [ALAT]
1778
1702
-
Arg
ACG
[ENA]
¡û
>W1710076065
BDAE01000016
Gammaproteobacteria
Pseudomonas luteola NBRC 103146 [BDAE]
18109
18033
-
Arg
ACG
[ENA]
¡û
>W1710076073
BDAE01000024
Gammaproteobacteria
Pseudomonas luteola NBRC 103146 [BDAE]
1808
1732
-
Arg
ACG
[ENA]
¡û
>W1710076074
BDAE01000024
Gammaproteobacteria
Pseudomonas luteola NBRC 103146 [BDAE]
1663
1587
-
Arg
ACG
[ENA]
¡û
>W1710549862
FOEV01000004
Gammaproteobacteria
Pseudomonas lutea [FOEV]
156071
156147
+
Arg
ACG
[ENA]
¡û
>W1710549863
FOEV01000004
Gammaproteobacteria
Pseudomonas lutea [FOEV]
156216
156292
+
Arg
ACG
[ENA]
¡û
>W1710549896
FOEV01000015
Gammaproteobacteria
Pseudomonas lutea [FOEV]
18434
18358
-
Arg
ACG
[ENA]
¡û
>W1710587673
FQYS01000001
Gammaproteobacteria
Pseudomonas zeshuii [FQYS]
118254
118178
-
Arg
ACG
[ENA]
¡û
>W1710587674
FQYS01000001
Gammaproteobacteria
Pseudomonas zeshuii [FQYS]
118109
118033
-
Arg
ACG
[ENA]
¡û
>W1710587707
FQYS01000015
Gammaproteobacteria
Pseudomonas zeshuii [FQYS]
115238
115314
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK