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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149891 (64 seq.)
>W1711360004
MDJD01000048
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
46538
46615
+
Pro
TGG
[ENA]
¡û
>W1711621230
MPCX01000001
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
40807
40884
+
Pro
TGG
[ENA]
¡û
>W1711621241
MPCX01000004
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
170190
170113
-
Pro
TGG
[ENA]
¡û
>WENV180084130
MPMD02150019
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
437
512
+
Pro
TGG
[ENA]
¡û
>WENV180104349
OAPC01002887
[OAPC] marine metagenome; na
352
277
-
Pro
TGG
[ENA]
¡û
>WENV180108938
OAPI01033504
[OAPI] marine metagenome; ENVO.00002150
219
294
+
Pro
TGG
[ENA]
¡û
>WENV180397681
OBPZ01000103
[OBPZ] marine metagenome; ENVO:00002010
1836
1911
+
Pro
TGG
[ENA]
¡û
>WENV180397682
OBPZ01000103
[OBPZ] marine metagenome; ENVO:00002010
2020
2095
+
Pro
TGG
[ENA]
¡û
>WENV183620394
OOFR01048148
[OOFR] marine metagenome; seawater
107
30
-
Pro
TGG
[ENA]
¡û
>WENV183629238
OOGP01012210
[OOGP] marine metagenome; seawater
1046
971
-
Pro
TGG
[ENA]
¡û
>WENV183629270
OOGP01015634
[OOGP] marine metagenome; seawater
543
618
+
Pro
TGG
[ENA]
¡û
>WENV183629271
OOGP01015634
[OOGP] marine metagenome; seawater
727
802
+
Pro
TGG
[ENA]
¡û
>WENV170274569
CERM01025810
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1123
1046
-
Pro
TGG
[ENA]
¡û
>WENV170394852
CEUC01061707
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
418
493
+
Pro
TGG
[ENA]
¡û
>WENV170504733
CEVV01376577
[CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1198
1121
-
Pro
TGG
[ENA]
¡û
>WENV170508089
CEVX01124178
[CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4685
4762
+
Pro
TGG
[ENA]
¡û
>WENV170799363
MDSV01212313
[MDSV] marine metagenome; seawater
438
361
-
Pro
TGG
[ENA]
¡û
>WENV170918473
MDTF01000928
[MDTF] marine metagenome; seawater
16459
16536
+
Pro
TGG
[ENA]
¡û
>WENV170919690
MDTF01011432
[MDTF] marine metagenome; seawater
19677
19600
-
Pro
TGG
[ENA]
¡û
>WENV170921586
MDTG01016884
[MDTG] marine metagenome; seawater
60827
60902
+
Pro
TGG
[ENA]
¡û
>W1910693666
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
375981
376056
+
Pro
TGG
[ENA]
¡û
>W1910693676
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
1028158
1028083
-
Pro
TGG
[ENA]
¡û
>W1810588113
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
359404
359329
-
Pro
TGG
[ENA]
¡û
>W1810588120
QFRI01000002
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
438575
438498
-
Pro
TGG
[ENA]
¡û
>W1810788346
QREI01000004
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
323719
323794
+
Pro
TGG
[ENA]
¡û
>W1810788361
QREI01000010
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
3331
3256
-
Pro
TGG
[ENA]
¡û
>W1810861123
QTTQ01000011
Bacteroidota
Lutibacter oceani 325-5 [QTTQ]
296793
296868
+
Pro
TGG
[ENA]
¡û
>W1810887380
QUOZ01000003
Bacteroidota
Lutibacter oceani JCM30924 [QUOZ]
296825
296900
+
Pro
TGG
[ENA]
¡û
>W2010597321
JABFDJ010000004
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
249266
249191
-
Pro
TGG
[ENA]
¡û
>W2010597338
JABFDJ010000009
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
22634
22559
-
Pro
TGG
[ENA]
¡û
>W2010598113
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
2357126
2357201
+
Pro
TGG
[ENA]
¡û
>W2010598115
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
3268862
3268937
+
Pro
TGG
[ENA]
¡û
>W2010612722
JABRWQ010000002
Bacteroidota
Winogradskyella litoriviva KMM6491 [JABRWQ]
441863
441788
-
Pro
TGG
[ENA]
¡û
>W2010612727
JABRWQ010000004
Bacteroidota
Winogradskyella litoriviva KMM6491 [JABRWQ]
76159
76084
-
Pro
TGG
[ENA]
¡û
>W2110246516
JACOQD010000002
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOQD]
458966
459041
+
Pro
TGG
[ENA]
¡û
>W2110246520
JACOQD010000002
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOQD]
835002
834927
-
Pro
TGG
[ENA]
¡û
>W2110285051
JACXXH010000001
Bacteroidota
Olleya marilimosa 28M-24 [JACXXH]
60765
60840
+
Pro
TGG
[ENA]
¡û
>W2110285056
JACXXH010000001
Bacteroidota
Olleya marilimosa 28M-24 [JACXXH]
720497
720420
-
Pro
TGG
[ENA]
¡û
>W2110326455
JADILU010000002
Bacteroidota
Arcticiflavibacter luteus SM1212 [JADILU]
701106
701031
-
Pro
TGG
[ENA]
¡û
>W2110326463
JADILU010000004
Bacteroidota
Arcticiflavibacter luteus SM1212 [JADILU]
93136
93061
-
Pro
TGG
[ENA]
¡û
>W2110611578
JAHKPN010000044
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
25200
25125
-
Pro
TGG
[ENA]
¡û
>W2110611580
JAHKPN010000052
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
117078
117153
+
Pro
TGG
[ENA]
¡û
>W2110668721
JAICBG010000002
Bacteroidota
Winogradskyella sp. SM1960 [JAICBG]
318665
318740
+
Pro
TGG
[ENA]
¡û
>W2110668733
JAICBG010000008
Bacteroidota
Winogradskyella sp. SM1960 [JAICBG]
67501
67426
-
Pro
TGG
[ENA]
¡û
>C211062777
CP045067
Bacteroidota
Lacinutrix sp. WUR7 [CP045067]
2601259
2601334
+
Pro
TGG
-
¡û
>C211062781
CP045067
Bacteroidota
Lacinutrix sp. WUR7 [CP045067]
3368464
3368389
-
Pro
TGG
-
¡û
>C231317971
CP092480
Bacteroidota
Lutibacter sp. A80 [CP092480]
37756
37831
+
Pro
TGG
-
¡û
>C231317976
CP092480
Bacteroidota
Lutibacter sp. A80 [CP092480]
1725424
1725499
+
Pro
TGG
-
¡û
>C241155423
CP053348
Bacteroidota
Winogradskyella forsetii HL857 [CP053348]
1337582
1337657
+
Pro
TGG
-
¡û
>C241155429
CP053348
Bacteroidota
Winogradskyella forsetii HL857 [CP053348]
2503970
2504045
+
Pro
TGG
-
¡û
>C241155461
CP053349
Bacteroidota
Winogradskyella forsetii HL6110 [CP053349]
2627828
2627903
+
Pro
TGG
-
¡û
>C241155467
CP053349
Bacteroidota
Winogradskyella forsetii HL6110 [CP053349]
3785387
3785462
+
Pro
TGG
-
¡û
>C241155579
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
2055593
2055668
+
Pro
TGG
-
¡û
>C241155581
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
2963197
2963272
+
Pro
TGG
-
¡û
>C11111985
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2141703
2141780
+
Pro
TGG
[Ensembl]
¡û
>C11111988
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2893405
2893328
-
Pro
TGG
[Ensembl]
¡û
>W1511388567
JSWF01000019
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
207042
206967
-
Pro
TGG
[ENA]
¡û
>W1511388572
JSWF01000025
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
253209
253132
-
Pro
TGG
[ENA]
¡û
>W1710516990
FNCZ01000005
Bacteroidota
Winogradskyella thalassocola [FNCZ]
111522
111597
+
Pro
TGG
[ENA]
¡û
>W1710517005
FNCZ01000011
Bacteroidota
Winogradskyella thalassocola [FNCZ]
126275
126350
+
Pro
TGG
[ENA]
¡û
>W1710767357
LIQG01000018
Bacteroidota
Lacinutrix mariniflava [LIQG]
23686
23609
-
Pro
TGG
[ENA]
¡û
>W1710767386
LIQG01000028
Bacteroidota
Lacinutrix mariniflava [LIQG]
79632
79709
+
Pro
TGG
[ENA]
¡û
>W1710767422
LIQH01000039
Bacteroidota
Lacinutrix algicola [LIQH]
434282
434359
+
Pro
TGG
[ENA]
¡û
>W1710767426
LIQH01000041
Bacteroidota
Lacinutrix algicola [LIQH]
82992
83069
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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