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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.149985 (6 seq.)
>WENV180085780
MPMD02371837
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
3640
3563
-
Pro
TGG
[ENA]
¡û
>WENV180086624
MPMD02493590
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
198
121
-
Pro
TGG
[ENA]
¡û
>WENV180086943
MPME02031733
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
102
25
-
Pro
TGG
[ENA]
¡û
>WENV183802601
PVBE010772408
[PVBE] marine metagenome; water
4595
4672
+
Pro
TGG
[ENA]
¡û
>WENV183809441
PVBE011388687
[PVBE] marine metagenome; water
18347
18270
-
Pro
TGG
[ENA]
¡û
>WENV183811904
PVBE011627107
[PVBE] marine metagenome; water
99291
99214
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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