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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150172 (33 seq.)
>W1711054845
LRUD01000009
Alphaproteobacteria
Celeribacter halophilus [LRUD]
30152
30228
+
Arg
ACG
[ENA]
¡û
>W131045412
AMRK01000018
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
56259
56335
+
Arg
ACG
[ENA]
¡û
>W08011133
ABSH01000039
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
62601
62528
-
Arg
ACG
[ENA]
¡û
>W08011228
ABSK01000021
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
50157
50084
-
Arg
ACG
[ENA]
¡û
>WENV181322919
OFKV01017284
[OFKV] marine metagenome; sea ice
295
219
-
Arg
ACG
[ENA]
¢þ
>WENV182561063
OJDV01003353
[OJDV] seawater metagenome; Sea water
2831
2907
+
Arg
ACG
[ENA]
¢þ
>WENV182581473
OJGX01008270
[OJGX] seawater metagenome; Sea water
445
521
+
Arg
ACG
[ENA]
¢þ
>WENV182589082
OJHY01022293
[OJHY] seawater metagenome; Sea water
730
654
-
Arg
ACG
[ENA]
¢þ
>WENV183065116
OLII01025982
[OLII] seawater metagenome; Sea water
528
604
+
Arg
ACG
[ENA]
¢þ
>WENV183624718
OOGE01003066
[OOGE] marine metagenome; sea ice
1467
1543
+
Arg
ACG
[ENA]
¢þ
>WENV170121105
CENL01050543
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2551
2627
+
Arg
ACG
[ENA]
¢þ
>WENV170704559
LLEL01000401
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
83
7
-
Arg
ACG
[ENA]
¢þ
>WENV170783894
MAAC01019413
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1226
1150
-
Arg
ACG
[ENA]
¢þ
>WENV170825685
MDSY01097886
[MDSY] marine metagenome; seawater
5402
5478
+
Arg
ACG
[ENA]
¢þ
>C191103707
CP033219
Alphaproteobacteria
Parasedimentitalea marina W43 [CP033219]
300670
300746
+
Arg
ACG
-
¡û
>C191103708
CP033219
Alphaproteobacteria
Parasedimentitalea marina W43 [CP033219]
307464
307540
+
Arg
ACG
-
¡û
>W1910443039
FWFS01000008
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
67031
67107
+
Arg
ACG
[ENA]
¡û
>W1910443189
FWFW01000003
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
295747
295823
+
Arg
ACG
[ENA]
¡û
>W1810685599
QKZJ01000023
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
3669
3593
-
Arg
ACG
[ENA]
¡û
>C151092027
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
296526
296602
+
Arg
ACG
-
¡û
>W1511479476
JWIE01000146
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [JWIE]
2278
2202
-
Arg
ACG
[ENA]
¡û
>W1511479498
JWIF01000048
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
487
563
+
Arg
ACG
[ENA]
¡û
>C161038805
CP012023
Alphaproteobacteria
Celeribacter marinus IMCC12053 [CP012023]
2987514
2987438
-
Arg
ACG
[Ensembl]
¡û
>C161071256
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
812355
812279
-
Arg
ACG
[Ensembl]
¡û
>C131005939
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
4305178
4305102
-
Arg
ACG
[Ensembl]
¡û
>C131005984
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
3888206
3888130
-
Arg
ACG
[Ensembl]
¡û
>W1610895891
LRUD01000009
Alphaproteobacteria
Celeribacter halophilus [LRUD]
30152
30228
+
Arg
ACG
[ENA]
¡û
>W1710515048
FNBL01000013
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
57552
57476
-
Arg
ACG
[ENA]
¡û
>W1710543290
FNZV01000006
Alphaproteobacteria
Pacificibacter marinus [FNZV]
153428
153352
-
Arg
ACG
[ENA]
¡û
>W1710566403
FORY01000005
Alphaproteobacteria
Celeribacter halophilus [FORY]
245492
245416
-
Arg
ACG
[ENA]
¡û
>W1710567130
FOSM01000007
Alphaproteobacteria
Celeribacter marinus [FOSM]
97082
97006
-
Arg
ACG
[ENA]
¡û
>W1710576953
FPAJ01000008
Alphaproteobacteria
Sulfitobacter marinus [FPAJ]
42840
42916
+
Arg
ACG
[ENA]
¡û
>W1710594962
FSRP01000002
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
18627
18551
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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