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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150403 (20 seq.)
>W1710996466
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
252987
253069
+
Gln
TTG
[ENA]
¡û
>W1711187487
LWPN01000114
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
4327
4408
+
Gln
TTG
[ENA]
¡û
>W131217046
ATWJ01000012
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
270721
270803
+
Gln
TTG
[ENA]
¡û
>W1711492033
MKKB01000221
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
10300
10379
+
Gln
TTG
[ENA]
¡û
>W1711492046
MKKB01000407
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
4113
4030
-
Gln
TTG
[ENA]
¡û
>C171034658
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
1491970
1492053
+
Gln
TTG
-
¡û
>W131161611
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
2700248
2700327
+
Gln
TTG
[ENA]
¡û
>WENV181189686
OEOF01157258
[OEOF] activated sludge metagenome; Activated Sludge
266
187
-
Gln
TTG
[ENA]
¢þ
>W141242948
CAJA01000077
Actinomycetota
Tetrasphaera australiensis Ben110 [CAJA]
2276
2197
-
Gln
TTG
[ENA]
¡û
>C181197171
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
3331242
3331160
-
Gln
TTG
-
¡û
>C191150935
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
607688
607607
-
Gln
TTG
-
¡û
>C191158403
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
688334
688255
-
Gln
TTG
-
¡û
>C191183696
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
558251
558168
-
Gln
TTG
-
¡û
>W09109324
ABUD01000021
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
10897
10816
-
Gln
TTG
[ENA]
¡û
>W1810189385
PKIZ01000026
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
16144
16064
-
Gln
TTG
[ENA]
¡û
>W1810535041
QDDJ01000010
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
43470
43390
-
Gln
TTG
[ENA]
¡û
>ENV09003691
ADGO01136133
Compost metagenome contig00001
148
67
-
Gln
TTG
[ENA]
¡û
>W1511568118
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
2802135
2802053
-
Gln
TTG
[ENA]
¡û
>W11177019
AFYF01000061
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
25762
25843
+
Gln
TTG
[ENA]
¡û
>W1610851123
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
252987
253069
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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