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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150542 (87 seq.)
>W1710905395
LNNF01000213
Bacteroidota
Flavobacterium psychrophilum [LNNF]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1710914566
LNTP01000412
Bacteroidota
Flavobacterium psychrophilum [LNTP]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1710914605
LNTQ01000168
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1711053988
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
434561
434637
+
Arg
TCT
[ENA]
¡û
>W1711413546
MGWI01000011
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
695
771
+
Arg
TCT
[ENA]
¡û
>W1711431516
MIJV01000032
Bacteroidota
Flavobacterium psychrophilum [MIJV]
81388
81312
-
Arg
TCT
[ENA]
¡û
>W1711431538
MIJW01000022
Bacteroidota
Flavobacterium psychrophilum [MIJW]
81089
81013
-
Arg
TCT
[ENA]
¡û
>W131229096
AUGN01000001
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
344734
344658
-
Arg
TCT
[ENA]
¡û
>W1711712459
MTBY01000020
Bacteroidota
Flavobacterium psychrophilum [MTBY]
93574
93650
+
Arg
TCT
[ENA]
¡û
>W1711712494
MTBZ01000015
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
64722
64798
+
Arg
TCT
[ENA]
¡û
>W1711712587
MTCB01000015
Bacteroidota
Flavobacterium psychrophilum [MTCB]
512314
512238
-
Arg
TCT
[ENA]
¡û
>W1711712613
MTCC01000013
Bacteroidota
Flavobacterium psychrophilum [MTCC]
362186
362110
-
Arg
TCT
[ENA]
¡û
>W1711712653
MTCD01000187
Bacteroidota
Flavobacterium psychrophilum [MTCD]
339
415
+
Arg
TCT
[ENA]
¡û
>C009499
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
910760
910836
+
Arg
TCT
[Ensembl]
¡û
>w023515
AAXX01000004
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
11045
11121
+
Arg
TCT
[ENA]
¡û
>WENV180594011
OCOY01010130
[OCOY] marine metagenome; ENVO:00002010
209
283
+
Arg
TCT
[ENA]
¢þ
>C181220286
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
1681135
1681061
-
Arg
TCT
-
¡û
>W141702899
JMLU01000010
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
76304
76380
+
Arg
TCT
[ENA]
¡û
>W1910184573
BJSV01000014
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
77775
77849
+
Arg
TCT
[ENA]
¡û
>W1910184630
BJSW01000035
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
66808
66734
-
Arg
TCT
[ENA]
¡û
>W1910184647
BJSX01000004
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
37148
37074
-
Arg
TCT
[ENA]
¡û
>W1910184689
BJSY01000011
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
37848
37774
-
Arg
TCT
[ENA]
¡û
>W1910184740
BJSZ01000038
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
66808
66734
-
Arg
TCT
[ENA]
¡û
>W1910184774
BJTA01000022
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
57956
58030
+
Arg
TCT
[ENA]
¡û
>W1910184888
BJTD01000031
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
59921
59995
+
Arg
TCT
[ENA]
¡û
>W1910184909
BJTE01000008
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
57937
58011
+
Arg
TCT
[ENA]
¡û
>W1910184950
BJTF01000010
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
77710
77784
+
Arg
TCT
[ENA]
¡û
>W1910502991
FYBY01000043
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
92218
92292
+
Arg
TCT
[ENA]
¡û
>W1910503027
FYBZ01000042
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
93309
93383
+
Arg
TCT
[ENA]
¡û
>W1910503052
FYCA01000034
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
50978
50904
-
Arg
TCT
[ENA]
¡û
>W1910503079
FYCB01000030
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
34019
34093
+
Arg
TCT
[ENA]
¡û
>W1910503122
FYCC01000034
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
4643
4569
-
Arg
TCT
[ENA]
¡û
>W1910503146
FYCD01000024
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
4643
4569
-
Arg
TCT
[ENA]
¡û
>W1910503179
FYCE01000037
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
66297
66223
-
Arg
TCT
[ENA]
¡û
>W1910503224
FYCF01000034
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
93137
93211
+
Arg
TCT
[ENA]
¡û
>W1910503259
FYCG01000040
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
69593
69519
-
Arg
TCT
[ENA]
¡û
>W1910503271
FYCH01000005
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
51806
51732
-
Arg
TCT
[ENA]
¡û
>W1910503307
FYCI01000005
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
97861
97935
+
Arg
TCT
[ENA]
¡û
>W1910503516
FYCM01000012
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
9474
9400
-
Arg
TCT
[ENA]
¡û
>W1910503550
FYCN01000212
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
71
145
+
Arg
TCT
[ENA]
¡û
>W1910503574
FYCO01000030
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
91037
91111
+
Arg
TCT
[ENA]
¡û
>W1910503613
FYCQ01000023
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
9005
8931
-
Arg
TCT
[ENA]
¡û
>W1910503650
FYCR01000338
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
8478
8404
-
Arg
TCT
[ENA]
¡û
>W1910503680
FYCS01000042
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
93138
93212
+
Arg
TCT
[ENA]
¡û
>W1910503693
FYCT01000005
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
50690
50616
-
Arg
TCT
[ENA]
¡û
>W1910503731
FYCU01000098
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
12867
12793
-
Arg
TCT
[ENA]
¡û
>W1910503763
FYCV01000166
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
12875
12801
-
Arg
TCT
[ENA]
¡û
>W1910503806
FYCW01000046
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
93137
93211
+
Arg
TCT
[ENA]
¡û
>W1910503841
FYCX01000055
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
77205
77279
+
Arg
TCT
[ENA]
¡û
>W1910503851
FYCY01000006
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
92962
93036
+
Arg
TCT
[ENA]
¡û
>W1910503887
FYCZ01000008
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
4643
4569
-
Arg
TCT
[ENA]
¡û
>W1910503923
FYDA01000007
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
73094
73020
-
Arg
TCT
[ENA]
¡û
>W1910503986
FYDB01000051
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
27410
27336
-
Arg
TCT
[ENA]
¡û
>W1910504002
FYDC01000009
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
93087
93161
+
Arg
TCT
[ENA]
¡û
>W1910505686
FYEO01000210
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
73
147
+
Arg
TCT
[ENA]
¡û
>W1910576485
JSCD01000005
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
60512
60438
-
Arg
TCT
[ENA]
¡û
>W1910576614
JSWL01000001
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
485652
485578
-
Arg
TCT
[ENA]
¡û
>W1910796595
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1251824
1251750
-
Arg
TCT
[ENA]
¡û
>W1910809485
MUHE01000002
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
2338
2264
-
Arg
TCT
[ENA]
¡û
>W1810694873
QLMI01000005
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
205429
205503
+
Arg
TCT
[ENA]
¡û
>W1810695795
QLST01000012
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
39826
39752
-
Arg
TCT
[ENA]
¡û
>C151018522
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
1671042
1670966
-
Arg
TCT
[Ensembl]
¡û
>C151018551
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1379849
1379925
+
Arg
TCT
[Ensembl]
¡û
>C151030359
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
1721934
1721858
-
Arg
TCT
[Ensembl]
¡û
>C151038963
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
849132
849208
+
Arg
TCT
[Ensembl]
¡û
>C151038999
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
835230
835306
+
Arg
TCT
[Ensembl]
¡û
>C151039036
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
844379
844455
+
Arg
TCT
[Ensembl]
¡û
>C151039528
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
838826
838902
+
Arg
TCT
[Ensembl]
¡û
>C151065051
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
909138
909214
+
Arg
TCT
-
¡û
>C151065099
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
908919
908995
+
Arg
TCT
-
¡û
>C151072385
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
921341
921417
+
Arg
TCT
-
¡û
>W1511526820
JYGZ01000001
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
401035
401111
+
Arg
TCT
[ENA]
¡û
>C161024418
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
908152
908228
+
Arg
TCT
-
¡û
>C161024466
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
909634
909710
+
Arg
TCT
-
¡û
>C161024514
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
909658
909734
+
Arg
TCT
-
¡û
>W1610062178
BCNG01000004
Bacteroidota
Flavobacterium psychrophilum [BCNG]
70453
70529
+
Arg
TCT
[ENA]
¡û
>W1610764409
LNNF01000213
Bacteroidota
Flavobacterium psychrophilum [LNNF]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1610772925
LNTP01000412
Bacteroidota
Flavobacterium psychrophilum [LNTP]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1610772964
LNTQ01000168
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
4702
4626
-
Arg
TCT
[ENA]
¡û
>W1610895176
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
434561
434637
+
Arg
TCT
[ENA]
¡û
>W1710059719
BCNG01000004
Bacteroidota
Flavobacterium psychrophilum [BCNG]
70453
70529
+
Arg
TCT
[ENA]
¡û
>W1710087866
BDSH01000015
Bacteroidota
Flavobacterium psychrophilum [BDSH]
35851
35927
+
Arg
TCT
[ENA]
¡û
>W1710507326
FMVE01000007
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
73607
73531
-
Arg
TCT
[ENA]
¡û
>W1710541052
FNYA01000001
Bacteroidota
Flavobacterium terrigena [FNYA]
69880
69804
-
Arg
TCT
[ENA]
¡û
>W1710555839
FOJT01000006
Bacteroidota
Flavobacterium swingsii [FOJT]
95972
96048
+
Arg
TCT
[ENA]
¡û
>W1710588380
FQZH01000002
Bacteroidota
Flavobacterium haoranii [FQZH]
250883
250807
-
Arg
TCT
[ENA]
¡û
>W1710593832
FRYK01000003
Bacteroidota
Flavobacterium cucumis [FRYK]
233876
233952
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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