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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150584 (47 seq.)
>w015446
AAPD01000007
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
65865
65943
+
Met
CAT
[ENA]
¡û
>w012580
AAMP01000002
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
98143
98221
+
Met
CAT
[ENA]
¡û
>C171092387
CP019342
Bacteroidota
Nonlabens tegetincola NBRC 100970 [CP019342]
1078642
1078568
-
Met
CAT
-
¡û
>WENV181163117
OEIO01099370
[OEIO] marine metagenome; sea ice
180
106
-
Met
CAT
[ENA]
¢þ
>W141238777
BBMJ01000006
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
60527
60451
-
Met
CAT
[ENA]
¡û
>W141238803
BBMK01000004
Bacteroidota
Nonlabens ulvanivorans [BBMK]
205895
205971
+
Met
CAT
[ENA]
¡û
>W141238836
BBML01000009
Bacteroidota
Nonlabens tegetincola sediminis [BBML]
58343
58269
-
Met
CAT
[ENA]
¡û
>W141238854
BBMM01000003
Bacteroidota
Nonlabens ulvanivorans [BBMM]
217144
217068
-
Met
CAT
[ENA]
¡û
>WENV182555152
OJCY01005219
[OJCY] seawater metagenome; Sea water
1703
1629
-
Met
CAT
[ENA]
¢þ
>WENV182557867
OJDL01000244
[OJDL] seawater metagenome; Sea water
12768
12694
-
Met
CAT
[ENA]
¢þ
>WENV182565385
OJEH01003619
[OJEH] seawater metagenome; Sea water
1789
1863
+
Met
CAT
[ENA]
¢þ
>WENV182572395
OJFL01005559
[OJFL] seawater metagenome; Sea water
1866
1792
-
Met
CAT
[ENA]
¢þ
>WENV182573080
OJFP01000060
[OJFP] seawater metagenome; Sea water
62679
62753
+
Met
CAT
[ENA]
¢þ
>WENV182576342
OJFX01012495
[OJFX] seawater metagenome; Sea water
1706
1632
-
Met
CAT
[ENA]
¢þ
>WENV182579257
OJGS01003370
[OJGS] seawater metagenome; Sea water
3154
3080
-
Met
CAT
[ENA]
¢þ
>WENV182580267
OJGU01027531
[OJGU] seawater metagenome; Sea water
89
163
+
Met
CAT
[ENA]
¢þ
>WENV182580596
OJGW01004161
[OJGW] seawater metagenome; Sea water
1824
1750
-
Met
CAT
[ENA]
¢þ
>WENV182583744
OJHE01001501
[OJHE] seawater metagenome; Sea water
1446
1520
+
Met
CAT
[ENA]
¢þ
>WENV182584613
OJHG01003038
[OJHG] seawater metagenome; Sea water
333
259
-
Met
CAT
[ENA]
¢þ
>WENV182585785
OJHI01010168
[OJHI] seawater metagenome; Sea water
767
841
+
Met
CAT
[ENA]
¢þ
>WENV182586917
OJHK01013347
[OJHK] seawater metagenome; Sea water
1114
1188
+
Met
CAT
[ENA]
¢þ
>WENV183061033
OLHY01030142
[OLHY] seawater metagenome; Sea water
725
799
+
Met
CAT
[ENA]
¢þ
>WENV183062489
OLID01022257
[OLID] seawater metagenome; Sea water
132
58
-
Met
CAT
[ENA]
¢þ
>WENV183617273
OOEE01141711
[OOEE] marine metagenome; sea ice
156
82
-
Met
CAT
[ENA]
¢þ
>WENV183621089
OOFT01005796
[OOFT] marine metagenome; sea ice
6
80
+
Met
CAT
[ENA]
¢þ
>WENV183621761
OOFU01051842
[OOFU] marine metagenome; sea ice
159
233
+
Met
CAT
[ENA]
¢þ
>WENV183625636
OOGG01004845
[OOGG] marine metagenome; sea ice
368
442
+
Met
CAT
[ENA]
¢þ
>WENV183627812
OOGL01051178
[OOGL] marine metagenome; sea ice
75
149
+
Met
CAT
[ENA]
¢þ
>WENV170371054
CETR01232450
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
731
807
+
Met
CAT
[ENA]
¢þ
>WENV170551059
CXWF01092436
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
199
125
-
Met
CAT
[ENA]
¢þ
>WENV170783399
MAAC01016534
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
705
781
+
Met
CAT
[ENA]
¢þ
>C181113292
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
2370658
2370584
-
Met
CAT
-
¡û
>C191127236
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
2074146
2074220
+
Met
CAT
-
¡û
>W141805213
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
1558146
1558070
-
Met
CAT
[ENA]
¡û
>W1910785611
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
1216532
1216606
+
Met
CAT
[ENA]
¡û
>W1910785684
MQVV01000016
Bacteroidota
Nonlabens tegetincola JCM 12886 [MQVV]
63585
63511
-
Met
CAT
[ENA]
¡û
>W1910785695
MQVW01000002
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
497510
497584
+
Met
CAT
[ENA]
¡û
>W1910805310
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
2916111
2916037
-
Met
CAT
[ENA]
¡û
>W1810296286
PTJE01000002
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
236965
237039
+
Met
CAT
[ENA]
¡û
>W1810356569
PVNA01000003
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
197847
197921
+
Met
CAT
[ENA]
¡û
>W1810685971
QKZR01000007
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
11378
11304
-
Met
CAT
[ENA]
¡û
>C10102656
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
2105444
2105518
+
Met
CAT
[Ensembl]
¡û
>C161000302
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
2567285
2567361
+
Met
CAT
[Ensembl]
¡û
>C161034398
CP011373
Bacteroidota
Nonlabens sp. MIC269 [CP011373]
160270
160344
+
Met
CAT
[Ensembl]
¡û
>C131001099
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
3078631
3078555
-
Met
CAT
[Ensembl]
¡û
>W1610584183
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
2343685
2343761
+
Met
CAT
[ENA]
¡û
>W1710703331
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
2343685
2343761
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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