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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150595 (39 seq.)
>C026082
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
615676
615600
-
Met
CAT
[Ensembl]
¡û
>w025446
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
444741
444819
+
Met
CAT
[ENA]
¡û
>w025420
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
243343
243265
-
Met
CAT
[ENA]
¡û
>w025395
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
46799
46721
-
Met
CAT
[ENA]
¡û
>w025365
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
287484
287562
+
Met
CAT
[ENA]
¡û
>w024350
AAYQ01000011
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
27714
27636
-
Met
CAT
[ENA]
¡û
>w024320
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
217026
216948
-
Met
CAT
[ENA]
¡û
>w024292
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
152460
152538
+
Met
CAT
[ENA]
¡û
>w024265
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
10552
10474
-
Met
CAT
[ENA]
¡û
>w024236
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
162496
162418
-
Met
CAT
[ENA]
¡û
>C171127301
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
545898
545974
+
Met
CAT
-
¡û
>C171127337
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
187875
187799
-
Met
CAT
-
¡û
>C171127355
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
653891
653967
+
Met
CAT
-
¡û
>C171127390
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
234689
234613
-
Met
CAT
-
¡û
>C171127410
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
706598
706522
-
Met
CAT
-
¡û
>WENV180225666
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
175138
175214
+
fMet
CAT
[ENA]
¢þ
>WENV180822775
ODJV01000985
[ODJV] human metagenome; G_DNA_Posterior fornix
151
75
-
fMet
CAT
[ENA]
¢þ
>W08002235
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
192635
192562
-
Met
CAT
[ENA]
¡û
>W08002270
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
188426
188353
-
Met
CAT
[ENA]
¡û
>W08002288
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
624539
624615
+
Met
CAT
[ENA]
¡û
>W08002315
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
521215
521291
+
Met
CAT
[ENA]
¡û
>W08002819
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
613242
613318
+
Met
CAT
[ENA]
¡û
>C08011107
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
615662
615589
-
Met
CAT
[Ensembl]
¡û
>WENV183722366
PDWJ01122639
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
118
42
-
fMet
CAT
[ENA]
¢þ
>W141455559
JFDP01000064
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
2767
2691
-
Met
CAT
[ENA]
¡û
>C191003527
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
438638
438562
-
Met
CAT
-
¡û
>W141779625
JONZ01000005
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
4448
4372
-
Met
CAT
[ENA]
¡û
>C09110792
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
694534
694458
-
Met
CAT
[Ensembl]
¡û
>W1911824665
QZWO01000052
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
551
475
-
Met
CAT
[ENA]
¡û
>W1810735680
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
30989
30913
-
Met
CAT
[ENA]
¡û
>W1810735697
QOKU01000119
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
637
561
-
Met
CAT
[ENA]
¡û
>W1810757248
QPHI01000084
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
551
475
-
Met
CAT
[ENA]
¡û
>W1810757274
QPHJ01000090
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
359
283
-
Met
CAT
[ENA]
¡û
>W1810757299
QPHK01000132
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
845
769
-
Met
CAT
[ENA]
¡û
>C151002390
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
307219
307295
+
Met
CAT
[Ensembl]
¡û
>W121060663
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
67788
67712
-
Met
CAT
[ENA]
¡û
>W121060694
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
93785
93709
-
Met
CAT
[ENA]
¡û
>W121060718
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
89909
89833
-
Met
CAT
[ENA]
¡û
>W121060745
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
89970
89894
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK