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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150727 (56 seq.)
>W131099062
AOSQ01000027
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
52383
52307
-
Pro
GGG
[ENA]
¡û
>W131182568
ARQM01000010
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
1590459
1590533
+
Pro
GGG
[ENA]
¡û
>W131240741
BAOL01000030
Actinomycetota
Ilumatobacter nonamiensis YM16-303 [BAOL]
5597
5673
+
Pro
GGG
[ENA]
¡û
>C015198
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
2671978
2672054
+
Pro
GGG
[Ensembl]
¡û
>WENV001417
AACY020040567
Marine microbial communities from Global Ocean Sampling (GOS)
1357
1433
+
Pro
GGG
[ENA]
>WENV180016039
FSTY01000235
[FSTY] metagenome; soil
7889
7815
-
Pro
GGG
[ENA]
¢þ
>WENV180016059
FSTY01000489
[FSTY] metagenome; soil
1156
1082
-
Pro
GGG
[ENA]
¢þ
>WENV180026223
FTIR01441240
[FTIR] metagenome; soil
1325
1399
+
Pro
GGG
[ENA]
¢þ
>WENV180031863
FTJU01000094
[FTJU] metagenome; soil
4126
4052
-
Pro
GGG
[ENA]
¢þ
>WENV180099931
OANK01004070
[OANK] marine metagenome; ENVO:00002010
533
607
+
Pro
GGG
[ENA]
¢þ
>WENV180101067
OAOU01000122
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3970
4044
+
Pro
GGG
[ENA]
¢þ
>WENV180102754
OAOZ01010572
[OAOZ] marine metagenome; ENVO:00002010
146
220
+
Pro
GGG
[ENA]
¢þ
>WENV180367544
OBOE01141030
[OBOE] marine metagenome; ENVO:00002010
243
317
+
Pro
GGG
[ENA]
¢þ
>WENV180389438
OBPJ01017865
[OBPJ] marine metagenome; seawater
592
666
+
Pro
GGG
[ENA]
¢þ
>WENV180585390
OCOL01004070
[OCOL] marine metagenome; ENVO:00002010
533
607
+
Pro
GGG
[ENA]
¢þ
>W141090071
AUWS01000084
Actinomycetota
Mycobacterium sp. UM_WWY [AUWS]
38824
38898
+
Pro
GGG
[ENA]
¡û
>W141223018
BACW01000563
Actinomycetota
Curtobacterium sp. B8 [BACW]
7133
7057
-
Pro
GGG
[ENA]
¡û
>W141285893
JAOH01000002
Actinomycetota
Mycobacteroides abscessus 1948 [JAOH]
1014821
1014897
+
Pro
GGG
[ENA]
¡û
>W141286579
JAOV01000001
Actinomycetota
Mycobacteroides abscessus MAB_091912_2455 [JAOV]
2095763
2095839
+
Pro
GGG
[ENA]
¡û
>W141291429
JASW01000077
Actinomycetota
Mycobacteroides abscessus Z58 [JASW]
179654
179730
+
Pro
GGG
[ENA]
¡û
>WENV183621713
OOFU01038096
[OOFU] marine metagenome; sea ice
362
288
-
Pro
GGG
[ENA]
¢þ
>WENV170120147
CENJ01196378
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
319
393
+
Pro
GGG
[ENA]
¢þ
>WENV170135033
CENU01167991
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1400
1326
-
Pro
GGG
[ENA]
¢þ
>WENV170536139
CEWP01154991
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
691
765
+
Pro
GGG
[ENA]
¢þ
>WENV170568844
FLMP01086326
[FLMP] seawater metagenome; seawater
227
151
-
Pro
GGG
[ENA]
¢þ
>WENV170572252
FLOH01000659
[FLOH] marine metagenome; water
39782
39706
-
Pro
GGG
[ENA]
¢þ
>WENV170600575
FUWD010133323
[FUWD] metagenome; unknown
179
103
-
Pro
GGG
[ENA]
¢þ
>WENV170623640
FUWD013161722
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170626437
FUWD013222485
[FUWD] metagenome; unknown
1059
983
-
Pro
GGG
[ENA]
¢þ
>WENV170631918
FUWD013371013
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170948815
MEHZ011286505
[MEHZ] marine metagenome; marine surface water
9762
9838
+
Pro
GGG
[ENA]
¢þ
>C191178334
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1328449
1328375
-
Pro
GGG
-
¡û
>C191178373
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1303319
1303245
-
Pro
GGG
-
¡û
>W141769465
JOFV01000015
Actinomycetota
Oerskovia turbata [JOFV]
67596
67672
+
Pro
GGG
[ENA]
¡û
>C151025285
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1342827
1342751
-
Pro
GGG
[Ensembl]
¡û
>SRA1050753
SRR035096.15205
454 Sequencing (SRP001817)
118
42
-
Pro
GGG
[SRA]
>C11101259
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
1603356
1603430
+
Pro
GGG
[Ensembl]
¡û
>W1510545257
CSTS01000006
Actinomycetota
Mycobacteroides abscessus PAP004 [CSTS]
90091
90015
-
Pro
GGG
[ENA]
¡û
>W1510548868
CSWE01000001
Actinomycetota
Mycobacteroides abscessus PAP076 [CSWE]
210696
210620
-
Pro
GGG
[ENA]
¡û
>W1510549053
CSWG01000015
Actinomycetota
Mycobacteroides abscessus PAP051 [CSWG]
28318
28394
+
Pro
GGG
[ENA]
¡û
>W1510550204
CSWX01000008
Actinomycetota
Mycobacteroides abscessus PAP096 [CSWX]
156421
156497
+
Pro
GGG
[ENA]
¡û
>W1510550855
CSXG01000008
Actinomycetota
Mycobacteroides abscessus PAP100 [CSXG]
79865
79789
-
Pro
GGG
[ENA]
¡û
>W1510552002
CSXX01000007
Actinomycetota
Mycobacteroides abscessus PAP115 [CSXX]
193064
192988
-
Pro
GGG
[ENA]
¡û
>W1510552465
CSYE01000008
Actinomycetota
Mycobacteroides abscessus PAP124 [CSYE]
79865
79789
-
Pro
GGG
[ENA]
¡û
>W1510553713
CSYY01000001
Actinomycetota
Mycobacteroides abscessus PAP145 [CSYY]
579591
579515
-
Pro
GGG
[ENA]
¡û
>W1510555255
CSZV01000011
Actinomycetota
Mycobacteroides abscessus PAP167 [CSZV]
79863
79787
-
Pro
GGG
[ENA]
¡û
>C11111561
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
1645547
1645623
+
Pro
GGG
[Ensembl]
¡û
>C11115516
CP002385
Actinomycetota
Mycolicibacterium gilvum Spyr1 [CP002385]
2933498
2933424
-
Pro
GGG
[Ensembl]
¡û
>W1511528844
JYIX01000036
Actinomycetota
Microbacterium azadirachtae ARN176 [JYIX]
63639
63563
-
Pro
GGG
[ENA]
¡û
>WENV047279
AACY022652634
Marine microbial communities from Global Ocean Sampling (GOS)
524
600
+
Pro
GGG
[ENA]
>WENV057682
AACY023302781
Marine microbial communities from Global Ocean Sampling (GOS)
753
829
+
Pro
GGG
[ENA]
>W121099839
AKUB01000004
Actinomycetota
Mycobacteroides abscessus 5S-0817 [AKUB]
81820
81896
+
Pro
GGG
[ENA]
¡û
>W121100360
AKUJ01000002
Actinomycetota
Mycobacteroides abscessus 1S-152-0914 [AKUJ]
1693142
1693218
+
Pro
GGG
[ENA]
¡û
>W121100405
AKUK01000010
Actinomycetota
Mycobacteroides abscessus 1S-153-0915 [AKUK]
360638
360714
+
Pro
GGG
[ENA]
¡û
>W121126213
BAGU01000549
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
337
263
-
Pro
GGG
[ENA]
¡û
>C131000135
AP012057
Actinomycetota
Ilumatobacter coccineus YM16-304 [AP012057]
2845072
2845148
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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