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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150969 (21 seq.)
>C007999
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
531315
531391
+
Asp
GTC
[Ensembl]
¡û
>C008007
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
534865
534941
+
Asp
GTC
[Ensembl]
¡û
>C008023
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3166197
3166273
+
Asp
GTC
[Ensembl]
¡û
>WENV181231090
OFEK01009358
[OFEK] activated sludge metagenome; Anaerobic digester
1455
1379
-
Asp
GTC
[ENA]
¢þ
>WENV170671629
LAHU01110575
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
427
503
+
Asp
GTC
[ENA]
¢þ
>WENV170968409
MTKW01009046
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
32012
31936
-
Asp
GTC
[ENA]
¢þ
>W141564740
JIAZ01000037
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
875
951
+
Asp
GTC
[ENA]
¡û
>W09105190
AAOP01000081
Bacillota
Desulforamulus reducens MI-1 [AAOP]
842
766
-
Asp
GTC
[ENA]
¡û
>W09135892
BAAC01000003
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
16076
16000
-
Asp
GTC
[ENA]
¡û
>W141817169
JQKL01000026
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
3479
3555
+
Asp
GTC
[ENA]
¡û
>W141817177
JQKL01000032
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
29954
30030
+
Asp
GTC
[ENA]
¡û
>W1910004964
AWVY01000037
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
42349
42273
-
Asp
GTC
[ENA]
¡û
>W1911661984
QFFZ01000061
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
8221
8297
+
Asp
GTC
[ENA]
¡û
>C11107345
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3472996
3472920
-
Asp
GTC
[Ensembl]
¡û
>C11107353
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3470294
3470218
-
Asp
GTC
[Ensembl]
¡û
>C11107372
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
660560
660484
-
Asp
GTC
[Ensembl]
¡û
>W1511499716
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
764425
764349
-
Asp
GTC
[ENA]
¡û
>W1511499740
JXAL01000013
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
816
892
+
Asp
GTC
[ENA]
¡û
>W1710590031
FRAR01000009
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
48109
48185
+
Asp
GTC
[ENA]
¡û
>W1710590039
FRAR01000009
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
52898
52974
+
Asp
GTC
[ENA]
¡û
>W1710590079
FRAR01000032
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
31388
31312
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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