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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151068 (38 seq.)
>w024824
AAZB01000001
Thermotogota
Petrotoga mobilis SJ95 [AAZB]
329239
329315
+
Met
CAT
[ENA]
¡û
>C171002433
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
49713
49637
-
Met
CAT
-
¡û
>WENV180094694
MTBK01025231
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
339
263
-
Ile2
CAT
[ENA]
¢þ
>C08007587
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
1340980
1340907
-
Met
CAT
[Ensembl]
¡û
>WENV170562382
CZCB01002388
[CZCB] anaerobic digester metagenome; anaerobic digester
5444
5520
+
Met
CAT
[ENA]
¢þ
>WENV170643651
JMBV01000031
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
50404
50480
+
Met
CAT
[ENA]
¢þ
>WENV170644314
JMBW01005413
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1370
1446
+
Met
CAT
[ENA]
¢þ
>WENV170644977
JMBX01000544
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
7289
7365
+
Met
CAT
[ENA]
¢þ
>WENV170676121
LDZR01001078
[LDZR] terrestrial metagenome; oil reservoir sample K2
1392
1316
-
Met
CAT
[ENA]
¢þ
>WENV170686837
LFRM01165755
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1981
1905
-
Met
CAT
[ENA]
¢þ
>WENV170726544
LSQX01385104
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9381
9457
+
Met
CAT
[ENA]
¢þ
>WENV170969243
MTKW01023503
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1981
1905
-
Met
CAT
[ENA]
¢þ
>W1910002794
ATNS01000016
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
7924
7848
-
Met
CAT
[ENA]
¡û
>W1910002899
AUPM01000003
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
116341
116265
-
Met
CAT
[ENA]
¡û
>W1910006030
AZRI01000024
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
7940
7864
-
Met
CAT
[ENA]
¡û
>W1910006088
AZRJ01000025
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
2135
2059
-
Met
CAT
[ENA]
¡û
>W1910006136
AZRK01000017
Thermotogota
Petrotoga sp. 9PWA.NaAc.5.4 [AZRK]
42413
42337
-
Met
CAT
[ENA]
¡û
>W1910006183
AZRL01000017
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
22281
22205
-
Met
CAT
[ENA]
¡û
>W1910006221
AZRM01000023
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
92433
92509
+
Met
CAT
[ENA]
¡û
>W1910006254
AZRN01000012
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
44777
44853
+
Met
CAT
[ENA]
¡û
>W1910563544
JAHC01000022
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
9224
9148
-
Met
CAT
[ENA]
¡û
>W1910563591
JAIP01000015
Thermotogota
Petrotoga sp. SL27 [JAIP]
36298
36222
-
Met
CAT
[ENA]
¡û
>W1910563664
JALY01000153
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
13266
13190
-
Met
CAT
[ENA]
¡û
>W1910568813
JGVM01000029
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
1313
1237
-
Met
CAT
[ENA]
¡û
>W1910568839
JGVT01000003
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
135866
135790
-
Met
CAT
[ENA]
¡û
>W1911679759
QHLX01000006
Thermotogota
Marinitoga lauensis LG1 [QHLX]
6589
6665
+
Met
CAT
[ENA]
¡û
>C151104212
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
2045495
2045419
-
Met
CAT
[Ensembl]
¡û
>C151104216
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
1813206
1813130
-
Met
CAT
[Ensembl]
¡û
>C121009812
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
49712
49636
-
Met
CAT
[Ensembl]
¡û
>W1610032643
AZAX01000011
Thermotogota
Marinitoga sp. 1155 [AZAX]
29877
29953
+
Met
CAT
[ENA]
¡û
>W1610032687
AZAY01000015
Thermotogota
Marinitoga sp. 1197 [AZAY]
68024
67948
-
Met
CAT
[ENA]
¡û
>W1610606962
LFTL01000053
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
1981
1905
-
Met
CAT
[ENA]
¡û
>W1610612789
LGFC01000254
Thermotogota
Petrotoga mobilis [LGFC]
1392
1316
-
Met
CAT
[ENA]
¡û
>W1710029388
AZAX01000011
Thermotogota
Marinitoga sp. 1155 [AZAX]
29877
29953
+
Met
CAT
[ENA]
¡û
>W1710029432
AZAY01000015
Thermotogota
Marinitoga sp. 1197 [AZAY]
68024
67948
-
Met
CAT
[ENA]
¡û
>W1710582890
FQUI01000025
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
29828
29904
+
Met
CAT
[ENA]
¡û
>W1710728249
LFTL01000053
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
1981
1905
-
Met
CAT
[ENA]
¡û
>W1710734110
LGFC01000254
Thermotogota
Petrotoga mobilis [LGFC]
1392
1316
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK