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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151683 (50 seq.)
>W1711283057
LZOF01000004
Spirochaetota
Brachyspira hampsonii [LZOF]
58370
58296
-
Ala
TGC
[ENA]
¡û
>W1711283105
LZOG01000144
Spirochaetota
Brachyspira hampsonii [LZOG]
83107
83181
+
Ala
TGC
[ENA]
¡û
>W1711307490
MAOX01000016
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
65974
65900
-
Ala
TGC
[ENA]
¡û
>W1711307528
MAOY01000014
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
16568
16642
+
Ala
TGC
[ENA]
¡û
>W1711351562
MDCO01000011
Spirochaetota
Brachyspira hampsonii [MDCO]
7034
6960
-
Ala
TGC
[ENA]
¡û
>W1711507047
MKXF01000015
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
63312
63238
-
Ala
TGC
[ENA]
¡û
>W131093665
AOMM01000498
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
758
832
+
Ala
TGC
[ENA]
¡û
>W131182400
ARQI01000123
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
24457
24531
+
Ala
TGC
[ENA]
¡û
>W131184520
ARSY01000050
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
106416
106342
-
Ala
TGC
[ENA]
¡û
>WENV180116972
OARB01001254
[OARB] human gut metagenome; ENVO:feces
582
508
-
Ala
TGC
[ENA]
¢þ
>WENV180117752
OARM01000046
[OARM] human gut metagenome; ENVO:feces
12298
12224
-
Ala
TGC
[ENA]
¢þ
>W141037647
ALNZ01000033
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
34203
34129
-
Ala
TGC
[ENA]
¡û
>W141275724
JADF01000008
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
90187
90261
+
Ala
TGC
[ENA]
¡û
>WENV170785227
MDSP01002846
[MDSP] gut metagenome; Stomach gut content
3117
3190
+
Ala
TGC
[ENA]
¢þ
>WENV170785455
MDSP01067083
[MDSP] gut metagenome; Stomach gut content
543
618
+
Ala
TGC
[ENA]
¢þ
>C181038057
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
190734
190808
+
Ala
TGC
-
¡û
>C191016989
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
3159439
3159513
+
Ala
TGC
-
¡û
>W09108412
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
748476
748550
+
Ala
TGC
[ENA]
¡û
>W1910000016
AFQM01000027
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
5045
5119
+
Ala
TGC
[ENA]
¡û
>C09102328
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
431258
431332
+
Ala
TGC
[Ensembl]
¡û
>W1910569149
JJMJ01000186
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
4393
4467
+
Ala
TGC
[ENA]
¡û
>W1910569202
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1677299
1677373
+
Ala
TGC
[ENA]
¡û
>W1910574899
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
557031
556957
-
Ala
TGC
[ENA]
¡û
>C10101936
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
86579
86653
+
Ala
TGC
[Ensembl]
¡û
>C10101982
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
2557709
2557783
+
Ala
TGC
[Ensembl]
¡û
>C11103130
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1815466
1815392
-
Ala
TGC
[Ensembl]
¡û
>W1510641510
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1462321
1462247
-
Ala
TGC
[ENA]
¡û
>W1511506950
JXNA01000067
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
68827
68901
+
Ala
TGC
[ENA]
¡û
>W1511506972
JXNB01000032
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
201614
201688
+
Ala
TGC
[ENA]
¡û
>W1511507000
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
151926
152000
+
Ala
TGC
[ENA]
¡û
>W1511507037
JXND01000024
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
28138
28212
+
Ala
TGC
[ENA]
¡û
>W1511507083
JXNE01000076
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
10194
10120
-
Ala
TGC
[ENA]
¡û
>W1511507112
JXNF01000067
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
17354
17428
+
Ala
TGC
[ENA]
¡û
>W1511507126
JXNG01000013
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
56078
56004
-
Ala
TGC
[ENA]
¡û
>W1511507172
JXNH01000071
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
202487
202561
+
Ala
TGC
[ENA]
¡û
>W1511507204
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
7496
7422
-
Ala
TGC
[ENA]
¡û
>W1511507238
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
158899
158825
-
Ala
TGC
[ENA]
¡û
>W1511507267
JXNK01000056
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
7599
7525
-
Ala
TGC
[ENA]
¡û
>W1511507309
JXNL01000137
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
220345
220419
+
Ala
TGC
[ENA]
¡û
>W1511507340
JXNM01000106
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
48603
48529
-
Ala
TGC
[ENA]
¡û
>W1511507348
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
124267
124341
+
Ala
TGC
[ENA]
¡û
>W1511507393
JXNO01000056
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
74173
74247
+
Ala
TGC
[ENA]
¡û
>W1511507417
JXNP01000020
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
192642
192568
-
Ala
TGC
[ENA]
¡û
>W1511507464
JXNQ01000053
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9800
9726
-
Ala
TGC
[ENA]
¡û
>W1511507485
JXNR01000053
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
15632
15706
+
Ala
TGC
[ENA]
¡û
>W1511507517
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
44753
44679
-
Ala
TGC
[ENA]
¡û
>C161092120
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
108601
108675
+
Ala
TGC
[Ensembl]
¡û
>C131001504
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
682989
682915
-
Ala
TGC
[Ensembl]
¡û
>C131003818
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1290377
1290451
+
Ala
TGC
[Ensembl]
¡û
>C131019652
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1529188
1529262
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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