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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151706 (50 seq.)
>W1711283056
LZOF01000004
Spirochaetota
Brachyspira hampsonii [LZOF]
58469
58395
-
Ile
GAT
[ENA]
¡û
>W1711283104
LZOG01000144
Spirochaetota
Brachyspira hampsonii [LZOG]
83008
83082
+
Ile
GAT
[ENA]
¡û
>W1711307489
MAOX01000016
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
66077
66003
-
Ile
GAT
[ENA]
¡û
>W1711307527
MAOY01000014
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
16465
16539
+
Ile
GAT
[ENA]
¡û
>W1711351561
MDCO01000011
Spirochaetota
Brachyspira hampsonii [MDCO]
7139
7065
-
Ile
GAT
[ENA]
¡û
>W1711507046
MKXF01000015
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
63415
63341
-
Ile
GAT
[ENA]
¡û
>W131093664
AOMM01000498
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
659
733
+
Ile
GAT
[ENA]
¡û
>W131182399
ARQI01000123
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
24354
24428
+
Ile
GAT
[ENA]
¡û
>W131184519
ARSY01000050
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
106519
106445
-
Ile
GAT
[ENA]
¡û
>WENV180116971
OARB01001254
[OARB] human gut metagenome; ENVO:feces
681
607
-
Ile
GAT
[ENA]
¢þ
>WENV180117751
OARM01000046
[OARM] human gut metagenome; ENVO:feces
12397
12323
-
Ile
GAT
[ENA]
¢þ
>W141037646
ALNZ01000033
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
34302
34228
-
Ile
GAT
[ENA]
¡û
>W141275723
JADF01000008
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
90085
90159
+
Ile
GAT
[ENA]
¡û
>WENV170785226
MDSP01002846
[MDSP] gut metagenome; Stomach gut content
3012
3086
+
Ile
GAT
[ENA]
¢þ
>WENV170785454
MDSP01067083
[MDSP] gut metagenome; Stomach gut content
467
540
+
Ile
GAT
[ENA]
¢þ
>C181038056
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
190631
190705
+
Ile
GAT
-
¡û
>C191016988
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
3159340
3159414
+
Ile
GAT
-
¡û
>W09108411
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
748373
748447
+
Ile
GAT
[ENA]
¡û
>W1910000015
AFQM01000027
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
4946
5020
+
Ile
GAT
[ENA]
¡û
>C09102327
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
431155
431229
+
Ile
GAT
[Ensembl]
¡û
>W1910569148
JJMJ01000186
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
4290
4364
+
Ile
GAT
[ENA]
¡û
>W1910569201
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1677200
1677274
+
Ile
GAT
[ENA]
¡û
>W1910574898
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
557134
557060
-
Ile
GAT
[ENA]
¡û
>C10101935
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
86476
86550
+
Ile
GAT
[Ensembl]
¡û
>C10101981
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
2557610
2557684
+
Ile
GAT
[Ensembl]
¡û
>C11103129
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1815570
1815496
-
Ile
GAT
[Ensembl]
¡û
>W1510641509
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1462424
1462350
-
Ile
GAT
[ENA]
¡û
>W1511506949
JXNA01000067
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
68724
68798
+
Ile
GAT
[ENA]
¡û
>W1511506971
JXNB01000032
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
201511
201585
+
Ile
GAT
[ENA]
¡û
>W1511506999
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
151823
151897
+
Ile
GAT
[ENA]
¡û
>W1511507036
JXND01000024
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
28035
28109
+
Ile
GAT
[ENA]
¡û
>W1511507082
JXNE01000076
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
10297
10223
-
Ile
GAT
[ENA]
¡û
>W1511507111
JXNF01000067
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
17251
17325
+
Ile
GAT
[ENA]
¡û
>W1511507125
JXNG01000013
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
56181
56107
-
Ile
GAT
[ENA]
¡û
>W1511507171
JXNH01000071
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
202384
202458
+
Ile
GAT
[ENA]
¡û
>W1511507203
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
7599
7525
-
Ile
GAT
[ENA]
¡û
>W1511507237
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
159002
158928
-
Ile
GAT
[ENA]
¡û
>W1511507266
JXNK01000056
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
7702
7628
-
Ile
GAT
[ENA]
¡û
>W1511507308
JXNL01000137
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
220242
220316
+
Ile
GAT
[ENA]
¡û
>W1511507339
JXNM01000106
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
48706
48632
-
Ile
GAT
[ENA]
¡û
>W1511507347
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
124164
124238
+
Ile
GAT
[ENA]
¡û
>W1511507392
JXNO01000056
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
74070
74144
+
Ile
GAT
[ENA]
¡û
>W1511507416
JXNP01000020
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
192745
192671
-
Ile
GAT
[ENA]
¡û
>W1511507463
JXNQ01000053
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9903
9829
-
Ile
GAT
[ENA]
¡û
>W1511507484
JXNR01000053
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
15529
15603
+
Ile
GAT
[ENA]
¡û
>W1511507516
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
44856
44782
-
Ile
GAT
[ENA]
¡û
>C161092119
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
108498
108572
+
Ile
GAT
[Ensembl]
¡û
>C131001503
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
683088
683014
-
Ile
GAT
[Ensembl]
¡û
>C131003817
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1290278
1290352
+
Ile
GAT
[Ensembl]
¡û
>C131019651
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1529089
1529163
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK