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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151718 (61 seq.)
>W131182384
ARQI01000102
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
19641
19566
-
Met
CAT
[ENA]
¡û
>W131184504
ARSY01000044
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
130922
130997
+
Met
CAT
[ENA]
¡û
>W1711283078
LZOF01000050
Spirochaetota
Brachyspira hampsonii [LZOF]
25497
25570
+
Met
CAT
[ENA]
¡û
>W1711283102
LZOG01000126
Spirochaetota
Brachyspira hampsonii [LZOG]
2596
2521
-
Met
CAT
[ENA]
¡û
>W1711307477
MAOX01000005
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
26498
26423
-
Met
CAT
[ENA]
¡û
>W1711307509
MAOY01000004
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
26477
26402
-
Met
CAT
[ENA]
¡û
>W1711351571
MDCO01000014
Spirochaetota
Brachyspira hampsonii [MDCO]
6352
6427
+
Met
CAT
[ENA]
¡û
>W1711507055
MKXF01000025
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
15776
15851
+
Met
CAT
[ENA]
¡û
>W131093642
AOMM01000185
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
2138
2211
+
Met
CAT
[ENA]
¡û
>WENV180116968
OARB01000945
[OARB] human gut metagenome; ENVO:feces
43
118
+
Met
CAT
[ENA]
¢þ
>WENV180117089
OARC01017210
[OARC] human gut metagenome; ENVO:feces
208
281
+
Met
CAT
[ENA]
¢þ
>WENV180117700
OARM01000010
[OARM] human gut metagenome; ENVO:feces
109277
109202
-
Met
CAT
[ENA]
¢þ
>W141037644
ALNZ01000029
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
14340
14415
+
Met
CAT
[ENA]
¡û
>WENV180598009
OCPL01126943
[OCPL] human gut metagenome; ENVO:feces
115
42
-
Met
CAT
[ENA]
¢þ
>WENV181665959
OGOJ01010524
[OGOJ] human gut metagenome; faeces
3273
3346
+
Met
CAT
[ENA]
¢þ
>WENV181705181
OGPK01003520
[OGPK] human gut metagenome; faeces
5700
5627
-
Met
CAT
[ENA]
¢þ
>W141275741
JADF01000022
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
48493
48418
-
Met
CAT
[ENA]
¡û
>WENV182964546
OKWR01003255
[OKWR] human gut metagenome; human gut
4629
4556
-
Met
CAT
[ENA]
¢þ
>WENV183384352
OLYN01002805
[OLYN] human gut metagenome; feces
4583
4510
-
Met
CAT
[ENA]
¢þ
>WENV183423569
OMBG01003272
[OMBG] human gut metagenome; feces
3091
3164
+
Met
CAT
[ENA]
¢þ
>WENV183447166
OMCS01002279
[OMCS] human gut metagenome; feces
5329
5256
-
Met
CAT
[ENA]
¢þ
>WENV183460559
OMDQ01010945
[OMDQ] human gut metagenome; feces
263
336
+
Met
CAT
[ENA]
¢þ
>WENV183641622
OQVL01057597
[OQVL] human gut metagenome; human gut
1125
1052
-
Met
CAT
[ENA]
¢þ
>WENV183653158
OQVZ01005536
[OQVZ] human gut metagenome; human gut
3602
3529
-
Met
CAT
[ENA]
¢þ
>WENV170785268
MDSP01005915
[MDSP] gut metagenome; Stomach gut content
1167
1240
+
Met
CAT
[ENA]
¢þ
>WENV170785446
MDSP01061114
[MDSP] gut metagenome; Stomach gut content
1289
1216
-
Met
CAT
[ENA]
¢þ
>C181038074
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2942171
2942246
+
Met
CAT
-
¡û
>C191017012
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
461120
461047
-
Met
CAT
-
¡û
>W09108416
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
946242
946167
-
Met
CAT
[ENA]
¡û
>W1910000022
AFQM01000036
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
111230
111305
+
Met
CAT
[ENA]
¡û
>W1910569144
JJMJ01000108
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
5583
5508
-
Met
CAT
[ENA]
¡û
>W1910569217
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1978602
1978527
-
Met
CAT
[ENA]
¡û
>W1910574896
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
666598
666523
-
Met
CAT
[ENA]
¡û
>C09102325
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
183289
183364
+
Met
CAT
[Ensembl]
¡û
>C10101965
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
284354
284279
-
Met
CAT
[Ensembl]
¡û
>C10101970
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
587929
588004
+
Met
CAT
[Ensembl]
¡û
>C11103127
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1971532
1971457
-
Met
CAT
[Ensembl]
¡û
>W1510641497
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
991996
992071
+
Met
CAT
[ENA]
¡û
>W1511506947
JXNA01000061
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
182922
182997
+
Met
CAT
[ENA]
¡û
>W1511506985
JXNB01000106
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
26525
26450
-
Met
CAT
[ENA]
¡û
>W1511507019
JXNC01000117
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
24530
24455
-
Met
CAT
[ENA]
¡û
>W1511507034
JXND01000022
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
24989
24914
-
Met
CAT
[ENA]
¡û
>W1511507075
JXNE01000051
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
26568
26493
-
Met
CAT
[ENA]
¡û
>W1511507116
JXNF01000081
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
26554
26479
-
Met
CAT
[ENA]
¡û
>W1511507140
JXNG01000042
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
6001
6076
+
Met
CAT
[ENA]
¡û
>W1511507177
JXNH01000079
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
42358
42283
-
Met
CAT
[ENA]
¡û
>W1511507208
JXNI01000088
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
26483
26408
-
Met
CAT
[ENA]
¡û
>W1511507227
JXNJ01000022
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
63181
63256
+
Met
CAT
[ENA]
¡û
>W1511507271
JXNK01000068
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
129101
129176
+
Met
CAT
[ENA]
¡û
>W1511507306
JXNL01000134
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
101613
101688
+
Met
CAT
[ENA]
¡û
>W1511507331
JXNM01000099
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
26544
26469
-
Met
CAT
[ENA]
¡û
>W1511507370
JXNN01000061
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
128705
128780
+
Met
CAT
[ENA]
¡û
>W1511507403
JXNO01000091
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
268107
268182
+
Met
CAT
[ENA]
¡û
>W1511507435
JXNP01000083
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
155303
155378
+
Met
CAT
[ENA]
¡û
>W1511507451
JXNQ01000014
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
5991
6066
+
Met
CAT
[ENA]
¡û
>W1511507491
JXNR01000062
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
42316
42241
-
Met
CAT
[ENA]
¡û
>W1511507529
JXNS01000168
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
26531
26456
-
Met
CAT
[ENA]
¡û
>C161092149
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
539909
539834
-
Met
CAT
[Ensembl]
¡û
>C131001508
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
77108
77033
-
Met
CAT
[Ensembl]
¡û
>C131003837
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
859154
859079
-
Met
CAT
[Ensembl]
¡û
>C131019658
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2033694
2033769
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK