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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151760 (68 seq.)
>W131051982
AMYG01000043
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
39578
39502
-
Asp
GTC
[ENA]
¡û
>W131052011
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
184
260
+
Asp
GTC
[ENA]
¡û
>W131167566
ARDJ01000017
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
89231
89155
-
Asp
GTC
[ENA]
¡û
>W131167588
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
96262
96186
-
Asp
GTC
[ENA]
¡û
>w018997
AATV01000070
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5526
5604
+
Asp
GTC
[ENA]
¡û
>w010168
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
178586
178508
-
Asp
GTC
[ENA]
¡û
>W141092593
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
17260
17184
-
Asp
GTC
[ENA]
¡û
>WENV181226197
OFDK01000195
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9184
9108
-
Asp
GTC
[ENA]
¢þ
>C08010954
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
929760
929836
+
Asp
GTC
[Ensembl]
¡û
>C08010971
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2075837
2075764
-
Asp
GTC
[Ensembl]
¡û
>C08011040
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
444150
444226
+
Asp
GTC
[Ensembl]
¡û
>C08011050
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
809140
809216
+
Asp
GTC
[Ensembl]
¡û
>W141276460
JADV01000002
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
14773
14849
+
Asp
GTC
[ENA]
¡û
>W141276501
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
521
597
+
Asp
GTC
[ENA]
¡û
>WENV170675625
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229294
229218
-
Asp
GTC
[ENA]
¢þ
>WENV170675632
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3031
3107
+
Asp
GTC
[ENA]
¢þ
>WENV170676521
LDZS01000604
[LDZS] terrestrial metagenome; oil reservoir sample K3
181
257
+
Asp
GTC
[ENA]
¢þ
>WENV170676893
LDZS01003104
[LDZS] terrestrial metagenome; oil reservoir sample K3
19
95
+
Asp
GTC
[ENA]
¢þ
>C191108124
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2739915
2739839
-
Asp
GTC
-
¡û
>C191108135
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2214933
2214857
-
Asp
GTC
-
¡û
>W09133525
ACPF01000019
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
30803
30727
-
Asp
GTC
[ENA]
¡û
>W09133561
ACPF01000148
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
190
266
+
Asp
GTC
[ENA]
¡û
>W09134110
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
45799
45723
-
Asp
GTC
[ENA]
¡û
>W09134155
ACQZ01000051
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
9269
9193
-
Asp
GTC
[ENA]
¡û
>W09135071
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
219
295
+
Asp
GTC
[ENA]
¡û
>W09135171
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21800
21724
-
Asp
GTC
[ENA]
¡û
>W09135859
ACXP01000016
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
37704
37628
-
Asp
GTC
[ENA]
¡û
>W09135879
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
278
354
+
Asp
GTC
[ENA]
¡û
>W1910976747
NKHD01000055
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
12781
12705
-
Asp
GTC
[ENA]
¡û
>W1910976750
NKHD01000056
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
8113
8189
+
Asp
GTC
[ENA]
¡û
>C151045318
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1939618
1939542
-
Asp
GTC
[Ensembl]
¡û
>C151045328
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1534154
1534078
-
Asp
GTC
[Ensembl]
¡û
>W10105921
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30551
30627
+
Asp
GTC
[ENA]
¡û
>W10105956
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
336
412
+
Asp
GTC
[ENA]
¡û
>W10120485
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30205
30281
+
Asp
GTC
[ENA]
¡û
>W10120518
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
704
780
+
Asp
GTC
[ENA]
¡û
>C10113400
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1986995
1986919
-
Asp
GTC
[Ensembl]
¡û
>C10113456
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1919607
1919531
-
Asp
GTC
[Ensembl]
¡û
>W11108244
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30551
30627
+
Asp
GTC
[ENA]
¡û
>W11108279
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
336
412
+
Asp
GTC
[ENA]
¡û
>W1511275079
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1472916
1472840
-
Asp
GTC
[ENA]
¡û
>W1511275091
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
925720
925644
-
Asp
GTC
[ENA]
¡û
>C11122467
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
439566
439642
+
Asp
GTC
[Ensembl]
¡û
>C11122477
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
801334
801410
+
Asp
GTC
[Ensembl]
¡û
>C11122710
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
878507
878583
+
Asp
GTC
[Ensembl]
¡û
>C11122729
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1984621
1984545
-
Asp
GTC
[Ensembl]
¡û
>C11123253
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2270204
2270128
-
Asp
GTC
[Ensembl]
¡û
>C11123264
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1665392
1665316
-
Asp
GTC
[Ensembl]
¡û
>W11127094
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30205
30281
+
Asp
GTC
[ENA]
¡û
>W11127127
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
704
780
+
Asp
GTC
[ENA]
¡û
>W11152660
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
22967
22891
-
Asp
GTC
[ENA]
¡û
>W11152669
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
25368
25292
-
Asp
GTC
[ENA]
¡û
>W121068080
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
123458
123382
-
Asp
GTC
[ENA]
¡û
>W121068106
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
74528
74604
+
Asp
GTC
[ENA]
¡û
>C131001912
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
409960
410036
+
Asp
GTC
[Ensembl]
¡û
>C131001939
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1968188
1968112
-
Asp
GTC
[Ensembl]
¡û
>W1610612257
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229294
229218
-
Asp
GTC
[ENA]
¡û
>W1610612264
LGEO01000007
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
3031
3107
+
Asp
GTC
[ENA]
¡û
>W1610613189
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
19
95
+
Asp
GTC
[ENA]
¡û
>W1710515312
FNBS01000018
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
7999
7923
-
Asp
GTC
[ENA]
¡û
>W1710515337
FNBS01000068
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
8911
8835
-
Asp
GTC
[ENA]
¡û
>W1710560359
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
534
610
+
Asp
GTC
[ENA]
¡û
>W1710560372
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
35029
35105
+
Asp
GTC
[ENA]
¡û
>W1710583292
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
218277
218201
-
Asp
GTC
[ENA]
¡û
>W1710583303
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
71919
71995
+
Asp
GTC
[ENA]
¡û
>W1710733763
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229294
229218
-
Asp
GTC
[ENA]
¡û
>W1710733770
LGEO01000007
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
3031
3107
+
Asp
GTC
[ENA]
¡û
>W1710734396
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
19
95
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK