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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151855 (12 seq.)
>WENV180259334
OBEQ011092882
[OBEQ] groundwater metagenome; groundwater
82
156
+
Pro
CGG
[ENA]
¡û
>WENV180729156
ODGU01225814
[ODGU] human metagenome; G_DNA_Supragingival plaque
103
26
-
Pro
CGG
[ENA]
¡û
>WENV180751178
ODHS01025606
[ODHS] human metagenome; G_DNA_Supragingival plaque
1274
1351
+
Pro
CGG
[ENA]
¡û
>WENV180797578
ODJB01080035
[ODJB] human metagenome; G_DNA_Supragingival plaque
642
719
+
Pro
CGG
[ENA]
¡û
>WENV180809449
ODJK01018292
[ODJK] human metagenome; G_DNA_Subgingival plaque
1555
1632
+
Pro
CGG
[ENA]
¡û
>WENV180981820
ODVE01067900
[ODVE] human metagenome; G_DNA_Supragingival plaque
166
89
-
Pro
CGG
[ENA]
¡û
>WENV181077585
OEAP01080976
[OEAP] human metagenome; G_DNA_Supragingival plaque
309
232
-
Pro
CGG
[ENA]
¡û
>WENV181172960
OEIV011102478
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
93
168
+
Pro
CGG
[ENA]
¡û
>WENV181180027
OEJT01052399
[OEJT] human metagenome; G_DNA_Supragingival plaque
186
263
+
Pro
CGG
[ENA]
¡û
>WENV181182884
OEJV01066794
[OEJV] human metagenome; G_DNA_Supragingival plaque
77
1
-
Pro
CGG
[ENA]
¡û
>WENV170662432
JXWW01065916
[JXWW] soil metagenome; rice field; organic GM Plot
420
346
-
Pro
CGG
[ENA]
¡û
>W2011483636
RQYL01000002
Synergistota
Fretibacterium sp. OH1220_COT-178 [RQYL]
112823
112746
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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