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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151870 (27 seq.)
>W1710875550
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71758
71834
+
Arg
TCT
[ENA]
¡û
>W131178667
ARLS01000053
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
290527
290603
+
Arg
TCT
[ENA]
¡û
>C007738
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
2353629
2353553
-
Arg
TCT
[Ensembl]
¡û
>C007934
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
518331
518407
+
Arg
TCT
[Ensembl]
¡û
>WENV180231910
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>WENV180232919
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>WENV180569680
OCLR01000306
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
56666
56742
+
Arg
TCT
[ENA]
¢þ
>WENV180570716
OCLS01000439
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
35010
35086
+
Arg
TCT
[ENA]
¢þ
>WENV180571279
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>WENV180573518
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>WENV180639591
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>WENV180640519
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
177666
177590
-
Arg
TCT
[ENA]
¢þ
>W141169931
AXWT01000024
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
21981
22057
+
Arg
TCT
[ENA]
¡û
>C181134302
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2627906
2627830
-
Arg
TCT
-
¡û
>W141561446
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
177958
177882
-
Arg
TCT
[ENA]
¡û
>W141702049
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
177843
177767
-
Arg
TCT
[ENA]
¡û
>W141711954
JMQF01000040
Deinococcota
Deinococcus sp. RL [JMQF]
20818
20894
+
Arg
TCT
[ENA]
¡û
>W09102015
AAHE01000007
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
7704
7780
+
Arg
TCT
[ENA]
¡û
>W1810003553
BFAG01000012
Deinococcota
Deinococcus aerius TR0125 [BFAG]
136042
135966
-
Arg
TCT
[ENA]
¡û
>W1810238343
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2378189
2378113
-
Arg
TCT
[ENA]
¡û
>C10105336
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
518331
518407
+
Arg
TCT
[Ensembl]
¡û
>C11107242
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1598065
1597989
-
Arg
TCT
[Ensembl]
¡û
>C11107263
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
518331
518407
+
Arg
TCT
[Ensembl]
¡û
>C121002081
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2594608
2594532
-
Arg
TCT
[Ensembl]
¡û
>C161082981
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2207248
2207172
-
Arg
TCT
-
¡û
>W1610737896
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71758
71834
+
Arg
TCT
[ENA]
¡û
>W1710605351
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
97321
97245
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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