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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151936 (22 seq.)
>C010001
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
1586938
1587014
+
Pro
GGG
[Ensembl]
¡û
>C010105
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1669588
1669664
+
Pro
GGG
[Ensembl]
¡û
>WENV180080440
MPMC02016800
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
302
378
+
Pro
GGG
[ENA]
¢þ
>WENV181304740
OFIB01010987
[OFIB] marine metagenome; seawater
140
67
-
Pro
GGG
[ENA]
¢þ
>WENV181306449
OFIK01026590
[OFIK] marine metagenome; seawater
396
471
+
Pro
GGG
[ENA]
¢þ
>WENV182547223
OJBS01000005
[OJBS] seawater metagenome; Sea water
126927
126851
-
Pro
GGG
[ENA]
¢þ
>WENV182558968
OJDN01026651
[OJDN] seawater metagenome; Sea water
678
602
-
Pro
GGG
[ENA]
¢þ
>WENV182567972
OJEP01006612
[OJEP] seawater metagenome; Sea water
717
641
-
Pro
GGG
[ENA]
¢þ
>WENV182585161
OJHH01002576
[OJHH] seawater metagenome; Sea water
3868
3944
+
Pro
GGG
[ENA]
¢þ
>WENV182588954
OJHY01004838
[OJHY] seawater metagenome; Sea water
1384
1460
+
Pro
GGG
[ENA]
¢þ
>WENV182591182
OJIL01000302
[OJIL] seawater metagenome; Sea water
7322
7246
-
Pro
GGG
[ENA]
¢þ
>WENV182593127
OJIT01000218
[OJIT] seawater metagenome; Sea water
1895
1971
+
Pro
GGG
[ENA]
¢þ
>WENV183806629
PVBE011133388
[PVBE] marine metagenome; water
547
471
-
Pro
GGG
[ENA]
¢þ
>WENV170662683
JXWW01137182
[JXWW] soil metagenome; rice field; organic GM Plot
152
228
+
Pro
GGG
[ENA]
¢þ
>WENV170879647
MDTC01098679
[MDTC] marine metagenome; seawater
380
304
-
Pro
GGG
[ENA]
¢þ
>C191000614
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1622865
1622941
+
Pro
GGG
-
¡û
>W09100211
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
518921
518845
-
Pro
GGG
[ENA]
¡û
>C10107447
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1639239
1639315
+
Pro
GGG
[Ensembl]
¡û
>W1511501017
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1708990
1708914
-
Pro
GGG
[ENA]
¡û
>C161025460
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4268367
4268291
-
Pro
GGG
[Ensembl]
¡û
>C161080262
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2053763
2053687
-
Pro
GGG
-
¡û
>W121010708
AGJM01000001
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
303469
303393
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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