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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151937 (29 seq.)
>W131228711
AUGE01000002
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
466098
466022
-
Arg
CCT
[ENA]
¡û
>C010106
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1672860
1672936
+
Arg
CCT
[Ensembl]
¡û
>C010257
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2956615
2956539
-
Arg
CCT
[Ensembl]
¡û
>C017479
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
2999897
2999973
+
Arg
CCT
[Ensembl]
¡û
>w024813
AAZA01000042
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
20038
19960
-
Arg
CCT
[ENA]
¡û
>w018120
AASH01000056
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
17122
17044
-
Arg
CCT
[ENA]
¡û
>WENV180315414
OBKH01086272
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¢þ
>W08010667
ABRF01000022
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
3993
4069
+
Arg
CCT
[ENA]
¡û
>WENV181231594
OFEK01040343
[OFEK] activated sludge metagenome; Anaerobic digester
351
427
+
Arg
CCT
[ENA]
¢þ
>C08005217
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
3106269
3106196
-
Arg
CCT
[Ensembl]
¡û
>WENV170004273
AGTN01623408
[AGTN] bioreactor metagenome; poplar biomass
318
394
+
Arg
CCT
[ENA]
¢þ
>WENV170006898
AMWB02062588
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
327
251
-
Arg
CCT
[ENA]
¢þ
>WENV170660166
JXWT01018250
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¢þ
>WENV170661313
JXWV01001047
[JXWV] soil metagenome; rice field; organic FYM Plot
300
224
-
Arg
CCT
[ENA]
¢þ
>C191000615
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1626137
1626213
+
Arg
CCT
-
¡û
>W09103553
AAJH01000025
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
6664
6740
+
Arg
CCT
[ENA]
¡û
>W09105079
AAON01000051
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
9108
9184
+
Arg
CCT
[ENA]
¡û
>W09133608
ACPJ01000003
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
198221
198297
+
Arg
CCT
[ENA]
¡û
>C09106370
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3679156
3679080
-
Arg
CCT
[Ensembl]
¡û
>C09106401
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
1817339
1817415
+
Arg
CCT
[Ensembl]
¡û
>W1810486149
QAXR01000003
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
235586
235662
+
Arg
CCT
[ENA]
¡û
>W1510006464
BAZF01000023
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
52743
52819
+
Arg
CCT
[ENA]
¡û
>C10107448
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1642511
1642587
+
Arg
CCT
[Ensembl]
¡û
>C11109592
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
3054921
3054845
-
Arg
CCT
[Ensembl]
¡û
>C161025461
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4265095
4265019
-
Arg
CCT
[Ensembl]
¡û
>C161080263
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2050482
2050406
-
Arg
CCT
-
¡û
>W1610046448
BBCJ01000032
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
25223
25147
-
Arg
CCT
[ENA]
¡û
>W1710043244
BBCJ01000032
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
25223
25147
-
Arg
CCT
[ENA]
¡û
>W1710087186
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1749211
1749135
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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