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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151979 (18 seq.)
>A171000868
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1015698
1015622
-
Phe
GAA
-
¡û
>A171001270
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1437239
1437163
-
Phe
GAA
-
¡û
>A171001489
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1156164
1156090
-
Phe
GAA
-
¡û
>A171004495
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1177131
1177055
-
Phe
GAA
-
¡û
>WENV180275268
OBHT01001306
[OBHT] metagenome; hydrothermal vent
775
699
-
Phe
GAA
[ENA]
¢þ
>WENV180288440
OBIL01174285
[OBIL] metagenome; hydrothermal vent
113
37
-
Phe
GAA
[ENA]
¢þ
>WENV180332386
OBLD01002170
[OBLD] metagenome; water
1309
1234
-
Phe
GAA
[ENA]
¢þ
>WENV181206648
OFAW01000871
[OFAW] metagenome; hydrothermal vent
1474
1399
-
Phe
GAA
[ENA]
¢þ
>WENV181206657
OFAW01001213
[OFAW] metagenome; hydrothermal vent
2166
2091
-
Phe
GAA
[ENA]
¢þ
>WENV181212781
OFBU01000081
[OFBU] metagenome; hydrothermal vent
9792
9716
-
Phe
GAA
[ENA]
¢þ
>WENV181213329
OFBV01000505
[OFBV] metagenome; hydrothermal vent
1497
1421
-
Phe
GAA
[ENA]
¢þ
>WENV181214569
OFBY01002241
[OFBY] metagenome; hydrothermal vent
1047
971
-
Phe
GAA
[ENA]
¢þ
>WENV181215052
OFBZ01002118
[OFBZ] metagenome; hydrothermal vent
357
281
-
Phe
GAA
[ENA]
¢þ
>WENV181215514
OFCA01001489
[OFCA] metagenome; hydrothermal vent
2697
2773
+
Phe
GAA
[ENA]
¢þ
>At0928
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
637583
637659
+
Phe
GAA
[Ensembl]
¡û
>W1610001121
ACQW01000016
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
582
506
-
Phe
GAA
[ENA]
¡û
>W1610001154
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
625
549
-
Phe
GAA
[ENA]
¡û
>W1610001644
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
77536
77612
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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