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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151992 (89 seq.)
>W1710786691
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
96925
97001
+
Met
CAT
[ENA]
¡û
>W1710876765
LMPN01000001
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
89338
89414
+
Met
CAT
[ENA]
¡û
>W1711009668
LQQV01000066
Bacillota
Brevibacillus parabrevis [LQQV]
77369
77445
+
Met
CAT
[ENA]
¡û
>W1711081353
LSSO01000174
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
10958
11034
+
Met
CAT
[ENA]
¡û
>W1711168678
LVYG01000025
Bacillota
Brevibacillus brevis [LVYG]
23787
23711
-
Met
CAT
[ENA]
¡û
>W1711208495
LXGJ01000099
Bacillota
Brevibacillus sp. WF146 [LXGJ]
3358
3282
-
Met
CAT
[ENA]
¡û
>W1711326442
MBFH01000014
Bacillota
Brevibacillus laterosporus [MBFH]
5429
5353
-
Met
CAT
[ENA]
¡û
>W1711800022
MXAR01000023
Bacillota
Brevibacillus brevis [MXAR]
93961
94037
+
Met
CAT
[ENA]
¡û
>W1711979157
NDGJ01000013
Bacillota
Paenibacillus apiarius [NDGJ]
362622
362698
+
Met
CAT
[ENA]
¡û
>W1711979261
NDGK01000023
Bacillota
Paenibacillus thiaminolyticus [NDGK]
286627
286703
+
Met
CAT
[ENA]
¡û
>W131239125
BALG01000160
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
3127
3051
-
Met
CAT
[ENA]
¡û
>W131006843
AHKL01000063
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
188123
188199
+
Met
CAT
[ENA]
¡û
>W131086463
AOBR01000017
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
74744
74820
+
Met
CAT
[ENA]
¡û
>W131104065
APBN01000001
Bacillota
Brevibacillus borstelensis AK1 [APBN]
813835
813759
-
Met
CAT
[ENA]
¡û
>W131170764
ARFS01000044
Bacillota
Brevibacillus laterosporus DSM 25 [ARFS]
3682
3606
-
Met
CAT
[ENA]
¡û
>WENV180014342
FPIC01179615
[FPIC] soil metagenome; Soil
165
89
-
Ile2
CAT
[ENA]
¢þ
>W141026772
AKYF01000017
Bacillota
Brevibacillus brevis X23 [AKYF]
133422
133346
-
Met
CAT
[ENA]
¡û
>W141080409
ATNE01000010
Bacillota
Brevibacillus thermoruber 423 [ATNE]
64754
64830
+
Met
CAT
[ENA]
¡û
>W141093497
AVBJ01000025
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
9045
8969
-
Met
CAT
[ENA]
¡û
>W141152403
AXBT01000049
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
41498
41574
+
Met
CAT
[ENA]
¡û
>WENV181801324
OGSB01000057
[OGSB] human gut metagenome; fecal sample 5 from infant 3
32273
32197
-
Ile2
CAT
[ENA]
¢þ
>WENV181810366
OGSV01000013
[OGSV] human gut metagenome; fecal sample 4 from infant 3
32273
32197
-
Ile2
CAT
[ENA]
¢þ
>WENV181822724
OGUH01000012
[OGUH] human gut metagenome; fecal sample 3 from infant 3
32273
32197
-
Ile2
CAT
[ENA]
¢þ
>W141185499
AYJU01000017
Bacillota
Brevibacillus panacihumi W25 [AYJU]
779488
779412
-
Met
CAT
[ENA]
¡û
>W141240265
CAGD01000003
Bacillota
Brevibacillus laterosporus GI-9 [CAGD]
232696
232620
-
Met
CAT
[ENA]
¡û
>W141240984
CAGW01000088
Bacillota
Brevibacillus massiliensis phR [CAGW]
1380
1304
-
Met
CAT
[ENA]
¡û
>W141288872
JAQG01000112
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
830
906
+
Met
CAT
[ENA]
¡û
>W141291587
JATL01000060
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
69956
69880
-
Met
CAT
[ENA]
¡û
>WENV170593093
FUFK010842633
[FUFK] metagenome; unknown
420
344
-
Met
CAT
[ENA]
¢þ
>C181027619
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
968483
968407
-
Met
CAT
-
¡û
>C181030683
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
3489900
3489824
-
Met
CAT
-
¡û
>C181082091
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
4457627
4457551
-
Met
CAT
-
¡û
>C181119008
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
4222754
4222678
-
Met
CAT
-
¡û
>C181188481
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
4276586
4276510
-
Met
CAT
-
¡û
>C191041879
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
2197193
2197269
+
Met
CAT
-
¡û
>C191089128
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
5555394
5555470
+
Met
CAT
-
¡û
>C191095619
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
452741
452665
-
Met
CAT
-
¡û
>C191207582
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
1962196
1962272
+
Met
CAT
-
¡û
>W141727962
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
1612233
1612157
-
Met
CAT
[ENA]
¡û
>W141808984
JPRB01000025
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
632
556
-
Met
CAT
[ENA]
¡û
>W141819405
JQMH01000002
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
519665
519589
-
Met
CAT
[ENA]
¡û
>W1910155142
BIMI01000006
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
140561
140637
+
Met
CAT
[ENA]
¡û
>W1910181750
BJMH01000026
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
82568
82492
-
Met
CAT
[ENA]
¡û
>W1910183507
BJNU01000006
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
88539
88615
+
Met
CAT
[ENA]
¡û
>W1910183890
BJOD01000011
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
61892
61816
-
Met
CAT
[ENA]
¡û
>W1910183962
BJOE01000056
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
2040
1964
-
Met
CAT
[ENA]
¡û
>W1910184229
BJOK01000069
Bacillota
Brevibacillus borstelensis NBRC 15714 [BJOK]
112
188
+
Met
CAT
[ENA]
¡û
>W1910184257
BJOL01000018
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
135951
135875
-
Met
CAT
[ENA]
¡û
>W1910184338
BJON01000026
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
4480
4404
-
Met
CAT
[ENA]
¡û
>W1910505883
FYER01000001
Bacillota
Paenibacillus aquistagni St-s [FYER]
868765
868689
-
Met
CAT
[ENA]
¡û
>W1910873599
NDIP01000026
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
6908
6832
-
Met
CAT
[ENA]
¡û
>W1911119509
NOLX01000045
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
6178
6102
-
Met
CAT
[ENA]
¡û
>C09101498
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
4247024
4246948
-
Met
CAT
[Ensembl]
¡û
>W1911681065
QJSB01000013
Bacillota
Brevibacillus laterosporus BON707 [QJSB]
3495
3419
-
Met
CAT
[ENA]
¡û
>W1911809770
QYZD01000002
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
217346
217270
-
Met
CAT
[ENA]
¡û
>W1810001192
BEXF01000017
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
59224
59300
+
Met
CAT
[ENA]
¡û
>W1810270984
PRKQ01000038
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
42864
42940
+
Met
CAT
[ENA]
¡û
>W1810271061
PRKR01000028
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
65210
65286
+
Met
CAT
[ENA]
¡û
>W1810271189
PRKS01000018
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
4947
4871
-
Met
CAT
[ENA]
¡û
>W1810389871
PXXZ01000009
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
134577
134501
-
Met
CAT
[ENA]
¡û
>W1810391248
PXZL01000001
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
89262
89338
+
Met
CAT
[ENA]
¡û
>W1810391409
PXZM01000029
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
268691
268615
-
Met
CAT
[ENA]
¡û
>W1810391493
PXZN01000016
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
89494
89570
+
Met
CAT
[ENA]
¡û
>W1810391637
PXZO01000051
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
37337
37413
+
Met
CAT
[ENA]
¡û
>W1810658156
QJJD01000031
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
3437
3361
-
Met
CAT
[ENA]
¡û
>W1810683209
QKVW01000010
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
97383
97459
+
Met
CAT
[ENA]
¡û
>W1810787411
QRDR01000011
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
89472
89548
+
Met
CAT
[ENA]
¡û
>W1810888346
QUQX01000007
Bacillota
Brevibacillus sp. VP [QUQX]
152488
152412
-
Met
CAT
[ENA]
¡û
>C151035323
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
4130858
4130782
-
Met
CAT
[Ensembl]
¡û
>W1511500223
JXAV01000017
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
92441
92517
+
Met
CAT
[ENA]
¡û
>W1511523197
JYCD01000039
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
14122
14198
+
Met
CAT
[ENA]
¡û
>W1511629646
LDCN01000001
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
1077430
1077354
-
Met
CAT
[ENA]
¡û
>W1511645903
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
3724735
3724659
-
Met
CAT
[ENA]
¡û
>W1511699571
LGIQ01000007
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
106658
106734
+
Met
CAT
[ENA]
¡û
>W1511700082
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
612425
612501
+
Met
CAT
[ENA]
¡û
>W11172382
AFRV01000008
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
133497
133573
+
Met
CAT
[ENA]
¡û
>W121084994
AKIX01000013
Bacillota
Brevibacillus sp. BC25 [AKIX]
103992
103916
-
Met
CAT
[ENA]
¡û
>W121086598
AKKB01000103
Bacillota
Brevibacillus sp. CF112 [AKKB]
312
236
-
Met
CAT
[ENA]
¡û
>W121034223
AHKH01000009
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
97179
97255
+
Met
CAT
[ENA]
¡û
>W1610650546
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
96925
97001
+
Met
CAT
[ENA]
¡û
>W1610739111
LMPN01000001
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
89338
89414
+
Met
CAT
[ENA]
¡û
>W1610858188
LQQV01000066
Bacillota
Brevibacillus parabrevis [LQQV]
77369
77445
+
Met
CAT
[ENA]
¡û
>W1610920188
LSSO01000174
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
10958
11034
+
Met
CAT
[ENA]
¡û
>W1610978473
LVYG01000025
Bacillota
Brevibacillus brevis [LVYG]
23787
23711
-
Met
CAT
[ENA]
¡û
>W1610996257
LXGJ01000099
Bacillota
Brevibacillus sp. WF146 [LXGJ]
3358
3282
-
Met
CAT
[ENA]
¡û
>W1611063295
MBFH01000014
Bacillota
Brevibacillus laterosporus [MBFH]
5429
5353
-
Met
CAT
[ENA]
¡û
>W1710081135
BDFB01000013
Bacillota
Brevibacillus brevis [BDFB]
158142
158066
-
Met
CAT
[ENA]
¡û
>W1710566137
FORT01000004
Bacillota
Brevibacillus centrosporus OK042 [FORT]
107156
107232
+
Met
CAT
[ENA]
¡û
>W1710608565
FXAZ01000001
Bacillota
Paenibacillus aquistagni 11 [FXAZ]
474795
474871
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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