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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152142 (93 seq.)
>w027662
ABCJ01000018
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
7505
7427
-
Ile
GAT
[ENA]
¡û
>w027654
ABCJ01000006
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
118001
118079
+
Ile
GAT
[ENA]
¡û
>w027652
ABCJ01000006
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
1952
2030
+
Ile
GAT
[ENA]
¡û
>w027645
ABCJ01000005
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
1952
2030
+
Ile
GAT
[ENA]
¡û
>w027638
ABCJ01000004
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
122418
122496
+
Ile
GAT
[ENA]
¡û
>w027629
ABCJ01000002
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
70679
70757
+
Ile
GAT
[ENA]
¡û
>WENV180275356
OBHT01013619
[OBHT] metagenome; hydrothermal vent
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV180287180
OBIK01000942
[OBIK] hydrothermal vent metagenome; sea water
2261
2185
-
Ile
GAT
[ENA]
¢þ
>WENV180287901
OBIL01011916
[OBIL] metagenome; hydrothermal vent
583
659
+
Ile
GAT
[ENA]
¢þ
>WENV180299586
OBJC01046768
[OBJC] metagenome; water
77
153
+
Ile
GAT
[ENA]
¢þ
>WENV180316967
OBKJ01003189
[OBKJ] metagenome; hydrothermal vent
989
913
-
Ile
GAT
[ENA]
¢þ
>WENV180317017
OBKJ01006353
[OBKJ] metagenome; hydrothermal vent
564
640
+
Ile
GAT
[ENA]
¢þ
>WENV180332515
OBLD01029963
[OBLD] metagenome; water
76
152
+
Ile
GAT
[ENA]
¢þ
>WENV180581048
OCMH01018822
[OCMH] metagenome; diffuse fluid
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV180581557
OCMK01005860
[OCMK] metagenome; diffuse fluid
184
260
+
Ile
GAT
[ENA]
¢þ
>WENV180581797
OCML01000898
[OCML] metagenome; diffuse fluid
380
304
-
Ile
GAT
[ENA]
¢þ
>WENV180634378
OCRB01004798
[OCRB] metagenome; diffuse fluid
572
648
+
Ile
GAT
[ENA]
¢þ
>WENV180647943
OCSI01028531
[OCSI] metagenome; diffuse fluid
213
137
-
Ile
GAT
[ENA]
¢þ
>W141078145
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
677654
677578
-
Ile
GAT
[ENA]
¡û
>W141078154
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
208040
207964
-
Ile
GAT
[ENA]
¡û
>W141078185
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
648370
648294
-
Ile
GAT
[ENA]
¡û
>W141078194
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
192178
192102
-
Ile
GAT
[ENA]
¡û
>W141078225
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
677575
677499
-
Ile
GAT
[ENA]
¡û
>W141078234
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
208007
207931
-
Ile
GAT
[ENA]
¡û
>W141078265
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
672343
672267
-
Ile
GAT
[ENA]
¡û
>W141078274
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
207699
207623
-
Ile
GAT
[ENA]
¡û
>W141078306
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
660899
660823
-
Ile
GAT
[ENA]
¡û
>W141078315
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
194245
194169
-
Ile
GAT
[ENA]
¡û
>W141078346
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
677675
677599
-
Ile
GAT
[ENA]
¡û
>W141078355
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
208048
207972
-
Ile
GAT
[ENA]
¡û
>WENV181206851
OFAW01015033
[OFAW] metagenome; hydrothermal vent
306
382
+
Ile
GAT
[ENA]
¢þ
>WENV181207304
OFAY01010533
[OFAY] metagenome; hydrothermal vent
430
354
-
Ile
GAT
[ENA]
¢þ
>WENV181207631
OFAZ01008553
[OFAZ] metagenome; hydrothermal vent
521
445
-
Ile
GAT
[ENA]
¢þ
>WENV181207632
OFAZ01008568
[OFAZ] metagenome; hydrothermal vent
762
686
-
Ile
GAT
[ENA]
¢þ
>WENV181207971
OFBA01005331
[OFBA] metagenome; hydrothermal vent
306
382
+
Ile
GAT
[ENA]
¢þ
>WENV181208250
OFBB01001381
[OFBB] metagenome; hydrothermal vent
2177
2101
-
Ile
GAT
[ENA]
¢þ
>WENV181208292
OFBB01002693
[OFBB] metagenome; hydrothermal vent
1429
1353
-
Ile
GAT
[ENA]
¢þ
>WENV181208680
OFBC01001440
[OFBC] metagenome; hydrothermal vent
306
382
+
Ile
GAT
[ENA]
¢þ
>WENV181208972
OFBD01001303
[OFBD] metagenome; hydrothermal vent
2319
2243
-
Ile
GAT
[ENA]
¢þ
>WENV181209114
OFBD01006517
[OFBD] metagenome; hydrothermal vent
846
770
-
Ile
GAT
[ENA]
¢þ
>WENV181209570
OFBE01010533
[OFBE] metagenome; hydrothermal vent
664
588
-
Ile
GAT
[ENA]
¢þ
>WENV181209809
OFBF01002109
[OFBF] metagenome; hydrothermal vent
40
116
+
Ile
GAT
[ENA]
¢þ
>WENV181210009
OFBG01001174
[OFBG] metagenome; hydrothermal vent
189
265
+
Ile
GAT
[ENA]
¢þ
>WENV181210024
OFBG01001491
[OFBG] metagenome; hydrothermal vent
1617
1541
-
Ile
GAT
[ENA]
¢þ
>WENV181210354
OFBH01000937
[OFBH] metagenome; hydrothermal vent
568
644
+
Ile
GAT
[ENA]
¢þ
>WENV181210375
OFBH01001224
[OFBH] metagenome; hydrothermal vent
2344
2268
-
Ile
GAT
[ENA]
¢þ
>WENV181210784
OFBI01001885
[OFBI] metagenome; hydrothermal vent
260
184
-
Ile
GAT
[ENA]
¢þ
>WENV181210896
OFBJ01000642
[OFBJ] metagenome; hydrothermal vent
1287
1211
-
Ile
GAT
[ENA]
¢þ
>WENV181210918
OFBJ01001164
[OFBJ] metagenome; hydrothermal vent
2389
2313
-
Ile
GAT
[ENA]
¢þ
>WENV181211372
OFBK01003194
[OFBK] metagenome; hydrothermal vent
189
265
+
Ile
GAT
[ENA]
¢þ
>WENV181211401
OFBK01004033
[OFBK] metagenome; hydrothermal vent
134
210
+
Ile
GAT
[ENA]
¢þ
>WENV181211611
OFBL01000254
[OFBL] metagenome; hydrothermal vent
2253
2329
+
Ile
GAT
[ENA]
¢þ
>WENV181211640
OFBL01000653
[OFBL] metagenome; hydrothermal vent
74
150
+
Ile
GAT
[ENA]
¢þ
>WENV181211898
OFBM01001176
[OFBM] metagenome; hydrothermal vent
183
259
+
Ile
GAT
[ENA]
¢þ
>WENV181211997
OFBM01004014
[OFBM] metagenome; hydrothermal vent
1106
1030
-
Ile
GAT
[ENA]
¢þ
>WENV181212997
OFBU01003910
[OFBU] metagenome; hydrothermal vent
1457
1381
-
Ile
GAT
[ENA]
¢þ
>WENV181213963
OFBW01004086
[OFBW] metagenome; hydrothermal vent
161
237
+
Ile
GAT
[ENA]
¢þ
>WENV181214266
OFBX01000180
[OFBX] metagenome; hydrothermal vent
1536
1612
+
Ile
GAT
[ENA]
¢þ
>WENV181214652
OFBY01005474
[OFBY] metagenome; hydrothermal vent
161
237
+
Ile
GAT
[ENA]
¢þ
>WENV181215101
OFBZ01003565
[OFBZ] metagenome; hydrothermal vent
581
657
+
Ile
GAT
[ENA]
¢þ
>WENV181215603
OFCA01004448
[OFCA] metagenome; hydrothermal vent
161
237
+
Ile
GAT
[ENA]
¢þ
>WENV181216220
OFCB01010658
[OFCB] metagenome; hydrothermal vent
823
747
-
Ile
GAT
[ENA]
¢þ
>WENV181216338
OFCB01022641
[OFCB] metagenome; hydrothermal vent
162
238
+
Ile
GAT
[ENA]
¢þ
>WENV181216469
OFCC01000301
[OFCC] metagenome; hydrothermal vent
2231
2307
+
Ile
GAT
[ENA]
¢þ
>WENV181223909
OFDD01002968
[OFDD] metagenome; hydrothermal vent
572
648
+
Ile
GAT
[ENA]
¢þ
>WENV181224056
OFDD01012763
[OFDD] metagenome; hydrothermal vent
306
382
+
Ile
GAT
[ENA]
¢þ
>WENV181224699
OFDG01001513
[OFDG] metagenome; hydrothermal vent
306
382
+
Ile
GAT
[ENA]
¢þ
>WENV181224776
OFDG01004113
[OFDG] metagenome; hydrothermal vent
1035
959
-
Ile
GAT
[ENA]
¢þ
>WENV181224972
OFDH01000438
[OFDH] metagenome; hydrothermal vent
2297
2221
-
Ile
GAT
[ENA]
¢þ
>WENV181224981
OFDH01000552
[OFDH] metagenome; hydrothermal vent
134
210
+
Ile
GAT
[ENA]
¢þ
>WENV181225429
OFDI01001432
[OFDI] metagenome; hydrothermal vent
450
526
+
Ile
GAT
[ENA]
¢þ
>WENV181225476
OFDI01002862
[OFDI] metagenome; hydrothermal vent
307
383
+
Ile
GAT
[ENA]
¢þ
>WENV181226333
OFDL01000270
[OFDL] metagenome; hydrothermal vent
3573
3497
-
Ile
GAT
[ENA]
¢þ
>WENV181226399
OFDL01001495
[OFDL] metagenome; hydrothermal vent
2042
1966
-
Ile
GAT
[ENA]
¢þ
>WENV181228321
OFDO01010058
[OFDO] metagenome; hydrothermal vent
633
557
-
Ile
GAT
[ENA]
¢þ
>WENV183712225
PDWI01092816
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1850
1774
-
Ile
GAT
[ENA]
¢þ
>WENV183720879
PDWJ01048065
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2687
2611
-
Ile
GAT
[ENA]
¢þ
>C191044893
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
144976
145052
+
Ile
GAT
-
¡û
>C191044908
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
669216
669292
+
Ile
GAT
-
¡û
>C191044922
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1753574
1753498
-
Ile
GAT
-
¡û
>C191044924
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1596882
1596806
-
Ile
GAT
-
¡û
>C191051413
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
128733
128809
+
Ile
GAT
-
¡û
>C191051421
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
624519
624595
+
Ile
GAT
-
¡û
>C191051430
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1745369
1745293
-
Ile
GAT
-
¡û
>C191051432
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1576348
1576272
-
Ile
GAT
-
¡û
>C191177836
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
353970
354046
+
Ile
GAT
-
¡û
>C191177842
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
669141
669217
+
Ile
GAT
-
¡û
>C191177866
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
30102
30026
-
Ile
GAT
-
¡û
>W1910015342
BDME01000005
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
1804
1880
+
Ile
GAT
[ENA]
¡û
>C09108034
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
141366
141442
+
Ile
GAT
[Ensembl]
¡û
>C09108049
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
643654
643730
+
Ile
GAT
[Ensembl]
¡û
>C09108063
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1637119
1637043
-
Ile
GAT
[Ensembl]
¡û
>C09108065
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1521897
1521821
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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