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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152147 (73 seq.)
>W1710857622
LMAK01000036
Bacteroidota
Formosa algae [LMAK]
86164
86088
-
Arg
TCT
[ENA]
¡û
>W1710927076
LOEY01000080
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
5204
5278
+
Arg
TCT
[ENA]
¡û
>W1711413537
MGWH01000006
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
318085
318011
-
Arg
TCT
[ENA]
¡û
>W1711711572
MTAZ01000098
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
207
131
-
Arg
TCT
[ENA]
¡û
>W131222421
AUBG01000002
Bacteroidota
Aequorivita capsosiphonis DSM 23843 [AUBG]
114305
114231
-
Arg
TCT
[ENA]
¡û
>W131223460
AUCB01000033
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
9655
9579
-
Arg
TCT
[ENA]
¡û
>W131225265
AUDK01000023
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
4968
4894
-
Arg
TCT
[ENA]
¡û
>W131234653
AUKX01000056
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
4696
4772
+
Arg
TCT
[ENA]
¡û
>C009426
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
5576056
5575980
-
Arg
TCT
[Ensembl]
¡û
>WENV180038587
LLBY010000236
[LLBY] soil metagenome; soil from tomato rhizosphere
27384
27458
+
Arg
TCT
[ENA]
¢þ
>WENV180040147
LLBY010418300
[LLBY] soil metagenome; soil from tomato rhizosphere
782
856
+
Arg
TCT
[ENA]
¢þ
>WENV180040730
LLBZ010009593
[LLBZ] soil metagenome; soil from tomato rhizosphere
42266
42192
-
Arg
TCT
[ENA]
¢þ
>WENV180102909
OAOZ01048806
[OAOZ] marine metagenome; ENVO:00002010
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV180210141
OBAL01124978
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
266
340
+
Arg
TCT
[ENA]
¢þ
>WENV180396745
OBPV01078999
[OBPV] marine metagenome; ENVO:00002010
107
181
+
Arg
TCT
[ENA]
¢þ
>W141079131
ATLG01000012
Bacteroidota
Cellulophaga baltica 4 [ATLG]
286431
286505
+
Arg
TCT
[ENA]
¡û
>W141079164
ATLH01000013
Bacteroidota
Cellulophaga baltica 13 [ATLH]
307621
307695
+
Arg
TCT
[ENA]
¡û
>W141079199
ATLI01000012
Bacteroidota
Cellulophaga baltica 18 [ATLI]
370681
370755
+
Arg
TCT
[ENA]
¡û
>W141079232
ATLJ01000015
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
14813
14887
+
Arg
TCT
[ENA]
¡û
>WENV181379420
OFRD01001313
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2109
2035
-
Arg
TCT
[ENA]
¢þ
>WENV183726739
PJTO01000111
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
87430
87356
-
Arg
TCT
[ENA]
¢þ
>WENV183729752
PJTR01000046
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
107687
107613
-
Arg
TCT
[ENA]
¢þ
>WENV183730708
PJTS01000369
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
14238
14164
-
Arg
TCT
[ENA]
¢þ
>WENV183731078
PJTS01007381
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
8
82
+
Arg
TCT
[ENA]
¢þ
>WENV183731551
PJTT01000019
[PJTT] soil metagenome; Soil (2) enriched on wood chips
242685
242611
-
Arg
TCT
[ENA]
¢þ
>WENV183734786
PJUA01000011
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
245422
245496
+
Arg
TCT
[ENA]
¢þ
>WENV183735823
PJUB01003919
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1965
1891
-
Arg
TCT
[ENA]
¢þ
>WENV183736067
PJUC01000012
[PJUC] soil metagenome; Soil enriched on filter paper
245422
245496
+
Arg
TCT
[ENA]
¢þ
>WENV170130524
CENR01005846
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
911
985
+
Arg
TCT
[ENA]
¢þ
>WENV170570467
FLOH01000005
[FLOH] marine metagenome; water
358936
358860
-
Arg
TCT
[ENA]
¢þ
>WENV170600573
FUWD010133228
[FUWD] metagenome; unknown
194
118
-
Arg
TCT
[ENA]
¢þ
>WENV170600644
FUWD010136307
[FUWD] metagenome; unknown
246
170
-
Arg
TCT
[ENA]
¢þ
>WENV170654500
JRYL01000083
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
107988
108064
+
Arg
TCT
[ENA]
¢þ
>WENV170705783
LNAP01000273
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
100660
100736
+
Arg
TCT
[ENA]
¢þ
>C181067212
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
3529135
3529211
+
Arg
TCT
-
¡û
>C181168505
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
2724813
2724739
-
Arg
TCT
-
¡û
>C181175950
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2699716
2699642
-
Arg
TCT
-
¡û
>C191133020
CP034951
Bacteroidota
Aequorivita sp. H23M31 [CP034951]
1605330
1605404
+
Arg
TCT
-
¡û
>W09105470
AAPM01000006
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
190
266
+
Arg
TCT
[ENA]
¡û
>W09110746
ABVW01000004
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
46044
46118
+
Arg
TCT
[ENA]
¡û
>W141807594
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
1636091
1636167
+
Arg
TCT
[ENA]
¡û
>W1910728209
MGWK01000026
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 [MGWK]
15273
15347
+
Arg
TCT
[ENA]
¡û
>W1910758280
MLJY01000033
Bacteroidota
Formosa algae KMM 8021 [MLJY]
12219
12293
+
Arg
TCT
[ENA]
¡û
>W1910785612
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
1305996
1306070
+
Arg
TCT
[ENA]
¡û
>W1910792785
MRCM01000013
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
66195
66269
+
Arg
TCT
[ENA]
¡û
>W1910809266
MUGZ01000011
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
357440
357366
-
Arg
TCT
[ENA]
¡û
>W1810669798
QJRJ01000073
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
97757
97683
-
Arg
TCT
[ENA]
¡û
>C151061201
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
2755451
2755525
+
Arg
TCT
[Ensembl]
¡û
>C151062876
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2802619
2802693
+
Arg
TCT
[Ensembl]
¡û
>C11104722
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
3519778
3519852
+
Arg
TCT
[Ensembl]
¡û
>W1511320942
JQCT01000028
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
191369
191443
+
Arg
TCT
[ENA]
¡û
>C121010157
CP003280
Bacteroidota
Aequorivita sublithincola DSM 14238 [CP003280]
3044107
3044181
+
Arg
TCT
[Ensembl]
¡û
>C161000305
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
2599524
2599448
-
Arg
TCT
[Ensembl]
¡û
>C161068707
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
2897667
2897593
-
Arg
TCT
[Ensembl]
¡û
>C161105072
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
1160742
1160818
+
Arg
TCT
[Ensembl]
¡û
>W1610082052
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
956514
956438
-
Arg
TCT
[ENA]
¡û
>W1610082709
BDGL01000028
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
339
263
-
Arg
TCT
[ENA]
¡û
>W1610534939
JRLG01000016
Bacteroidota
Flavobacterium daejeonense [JRLG]
309391
309315
-
Arg
TCT
[ENA]
¡û
>W1610584184
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
2432237
2432313
+
Arg
TCT
[ENA]
¡û
>W1610720003
LMAK01000036
Bacteroidota
Formosa algae [LMAK]
86164
86088
-
Arg
TCT
[ENA]
¡û
>W1610784618
LOEY01000080
Bacteroidota
Lutibacter sp. BRH_c52 [LOEY]
5204
5278
+
Arg
TCT
[ENA]
¡û
>W1710080825
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
956514
956438
-
Arg
TCT
[ENA]
¡û
>W1710081883
BDGL01000028
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
339
263
-
Arg
TCT
[ENA]
¡û
>W1710529053
FNNS01000008
Bacteroidota
Aequorivita viscosa [FNNS]
78826
78752
-
Arg
TCT
[ENA]
¡û
>W1710585338
FQWH01000002
Bacteroidota
Flavobacterium johnsoniae [FQWH]
137813
137739
-
Arg
TCT
[ENA]
¡û
>W1710587023
FQXQ01000007
Bacteroidota
Wenyingzhuangia marina [FQXQ]
12953
13027
+
Arg
TCT
[ENA]
¡û
>W1710587811
FQYV01000007
Bacteroidota
Aequorivita viscosa [FQYV]
78425
78351
-
Arg
TCT
[ENA]
¡û
>W1710587884
FQYX01000002
Bacteroidota
Arenibacter nanhaiticus [FQYX]
277713
277789
+
Arg
TCT
[ENA]
¡û
>W1710587914
FQYX01000020
Bacteroidota
Arenibacter nanhaiticus [FQYX]
82204
82280
+
Arg
TCT
[ENA]
¡û
>W1710589922
FRAO01000003
Bacteroidota
Flavobacterium johnsoniae [FRAO]
545157
545233
+
Arg
TCT
[ENA]
¡û
>W1710606149
FWXO01000002
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
383856
383780
-
Arg
TCT
[ENA]
¡û
>W1710637175
JRLG01000016
Bacteroidota
Flavobacterium daejeonense [JRLG]
309391
309315
-
Arg
TCT
[ENA]
¡û
>W1710703332
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
2432237
2432313
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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