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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152155 (23 seq.)
>WENV180203450
OBAG01012543
[OBAG] human gut metagenome; human gut
490
414
-
Arg
ACG
[ENA]
¢þ
>W141088563
AUVG01000026
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
125128
125204
+
Arg
ACG
[ENA]
¡û
>WENV183357049
OLXF01006099
[OLXF] human gut metagenome; feces
3841
3917
+
Arg
ACG
[ENA]
¢þ
>WENV183370906
OLXV01002397
[OLXV] human gut metagenome; feces
4951
4875
-
Arg
ACG
[ENA]
¢þ
>WENV183521248
OMNU01002134
[OMNU] human gut metagenome; feces
3841
3917
+
Arg
ACG
[ENA]
¢þ
>WENV170067178
CDZO01003434
[CDZO] gut metagenome; human stools
292
368
+
Arg
ACG
[ENA]
¢þ
>WENV170067345
CDZO01008779
[CDZO] gut metagenome; human stools
1364
1440
+
Arg
ACG
[ENA]
¢þ
>WENV170561714
CZCA01022742
[CZCA] anaerobic digester metagenome; anaerobic digester
847
923
+
Arg
ACG
[ENA]
¢þ
>WENV170562256
CZCB01001676
[CZCB] anaerobic digester metagenome; anaerobic digester
2766
2842
+
Arg
ACG
[ENA]
¢þ
>WENV170688563
LFRM01251242
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2037
1961
-
Arg
ACG
[ENA]
¢þ
>WENV170726731
LSQX01392141
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2956
3032
+
Arg
ACG
[ENA]
¢þ
>C181115556
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1887715
1887791
+
Arg
ACG
-
¡û
>C191031559
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1852854
1852930
+
Arg
ACG
-
¡û
>C191031614
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1887641
1887717
+
Arg
ACG
-
¡û
>C191072225
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1887711
1887787
+
Arg
ACG
-
¡û
>W1910438246
FWCH01000010
Bacillota
Provencibacterium massiliense Marseille-P2780 [FWCH]
2289
2365
+
Arg
ACG
[ENA]
¡û
>W1810904741
QVEO01000003
Bacillota
Harryflintia acetispora AM01-30 [QVEO]
38176
38252
+
Arg
ACG
[ENA]
¡û
>C151102778
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
423460
423384
-
Arg
ACG
[Ensembl]
¡û
>W10115306
ADJQ01000019
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
665
589
-
Arg
ACG
[ENA]
¡û
>C11108752
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1887714
1887790
+
Arg
ACG
[Ensembl]
¡û
>W11118892
ADJQ01000019
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
665
589
-
Arg
ACG
[ENA]
¡û
>W1610606098
LFSO01000028
Bacillota
Clostridiales bacterium DTU053 [LFSO]
2037
1961
-
Arg
ACG
[ENA]
¡û
>W1710727385
LFSO01000028
Bacillota
Clostridiales bacterium DTU053 [LFSO]
2037
1961
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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