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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152197 (38 seq.)
>C171127307
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
127892
127814
-
His
GTG
-
¡û
>C171127316
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
600138
600216
+
His
GTG
-
¡û
>C171127360
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
240796
240718
-
His
GTG
-
¡û
>C171127369
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
652718
652796
+
His
GTG
-
¡û
>C171127395
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
392385
392463
+
His
GTG
-
¡û
>C026060
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
305518
305596
+
His
GTG
[Ensembl]
¡û
>w025452
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
29692
29772
+
His
GTG
[ENA]
¡û
>w025430
AAZS01000004
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
53478
53398
-
His
GTG
[ENA]
¡û
>w025397
AAZR01000004
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
28080
28160
+
His
GTG
[ENA]
¡û
>w025376
AAZQ01000002
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
43355
43275
-
His
GTG
[ENA]
¡û
>w024334
AAYQ01000004
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
26965
27045
+
His
GTG
[ENA]
¡û
>w024325
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
148913
148993
+
His
GTG
[ENA]
¡û
>w024299
AAYO01000007
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
30128
30208
+
His
GTG
[ENA]
¡û
>w024272
AAYN01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
24341
24261
-
His
GTG
[ENA]
¡û
>w024242
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
3155
3235
+
His
GTG
[ENA]
¡û
>WENV180225680
OBBO01000009
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
38409
38331
-
His
GTG
[ENA]
¢þ
>WENV180554118
OCJM01001367
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
310
232
-
His
GTG
[ENA]
¢þ
>WENV180822742
ODJV01000075
[ODJV] human metagenome; G_DNA_Posterior fornix
3493
3571
+
His
GTG
[ENA]
¢þ
>WENV180914442
ODSW01009792
[ODSW] human metagenome; G_DNA_Posterior fornix
207
129
-
His
GTG
[ENA]
¢þ
>W08002240
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
159728
159806
+
His
GTG
[ENA]
¡û
>W08002249
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
606511
606589
+
His
GTG
[ENA]
¡û
>W08002294
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
151299
151224
-
His
GTG
[ENA]
¡û
>W08002320
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
49444
49369
-
His
GTG
[ENA]
¡û
>W08002824
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
140852
140777
-
His
GTG
[ENA]
¡û
>C08011085
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
305554
305632
+
His
GTG
[Ensembl]
¡û
>C191003504
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
124525
124603
+
His
GTG
-
¡û
>C09110770
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
293296
293374
+
His
GTG
[Ensembl]
¡û
>W1911824673
QZWO01000120
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
779
701
-
His
GTG
[ENA]
¡û
>W1810735657
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
119895
119973
+
His
GTG
[ENA]
¡û
>W1810735683
QOKU01000045
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
10684
10762
+
His
GTG
[ENA]
¡û
>W1810757233
QPHI01000033
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
1645
1723
+
His
GTG
[ENA]
¡û
>W1810757259
QPHJ01000039
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
4759
4837
+
His
GTG
[ENA]
¡û
>W1810757285
QPHK01000059
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
5296
5374
+
His
GTG
[ENA]
¡û
>C151002394
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
620905
620827
-
His
GTG
[Ensembl]
¡û
>W121060645
AJFX01000003
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
57649
57727
+
His
GTG
[ENA]
¡û
>W121060677
AJFY01000007
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
49027
48949
-
His
GTG
[ENA]
¡û
>W121060701
AJFZ01000004
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
49112
49034
-
His
GTG
[ENA]
¡û
>W121060728
AJGA01000007
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
49391
49313
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK