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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152262 (46 seq.)
>C171059710
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
1887807
1887882
+
Val
TAC
-
¡û
>WENV180296855
OBJA01003856
[OBJA] soil metagenome; sediment, water from around vicinity
2175
2100
-
Val
TAC
[ENA]
¡û
>WENV180383118
OBOU01001501
[OBOU] marine metagenome; ENV:00002010
908
983
+
Val
TAC
[ENA]
¡û
>WENV181325466
OFLJ01001062
[OFLJ] seawater metagenome; seawater
2654
2579
-
Val
TAC
[ENA]
¡û
>WENV182548559
OJBW01002401
[OJBW] seawater metagenome; Sea water
789
864
+
Val
TAC
[ENA]
¡û
>WENV182553231
OJCR01000715
[OJCR] seawater metagenome; Sea water
6965
6890
-
Val
TAC
[ENA]
¡û
>WENV182556392
OJDG01006931
[OJDG] seawater metagenome; Sea water
334
409
+
Val
TAC
[ENA]
¡û
>WENV182561727
OJDX01001155
[OJDX] seawater metagenome; Sea water
135
60
-
Val
TAC
[ENA]
¡û
>WENV182562077
OJDY01005053
[OJDY] seawater metagenome; Sea water
189
114
-
Val
TAC
[ENA]
¡û
>WENV182562756
OJEA01001241
[OJEA] seawater metagenome; Sea water
2748
2673
-
Val
TAC
[ENA]
¡û
>WENV182563355
OJEB01013425
[OJEB] seawater metagenome; Sea water
24
99
+
Val
TAC
[ENA]
¡û
>WENV182565185
OJEH01000183
[OJEH] seawater metagenome; Sea water
11110
11035
-
Val
TAC
[ENA]
¡û
>WENV182569051
OJEY01000157
[OJEY] seawater metagenome; Sea water
8467
8392
-
Val
TAC
[ENA]
¡û
>WENV182573386
OJFP01001220
[OJFP] seawater metagenome; Sea water
12701
12776
+
Val
TAC
[ENA]
¡û
>WENV182574851
OJFS01003759
[OJFS] seawater metagenome; Sea water
1792
1717
-
Val
TAC
[ENA]
¡û
>WENV182582471
OJHB01000327
[OJHB] seawater metagenome; Sea water
2358
2283
-
Val
TAC
[ENA]
¡û
>WENV182583438
OJHD01012619
[OJHD] seawater metagenome; Sea water
24
99
+
Val
TAC
[ENA]
¡û
>WENV182587597
OJHN01000246
[OJHN] seawater metagenome; Sea water
2936
3011
+
Val
TAC
[ENA]
¡û
>WENV182590745
OJIK01000193
[OJIK] seawater metagenome; Sea water
3295
3370
+
Val
TAC
[ENA]
¡û
>WENV182594085
OJIV01000292
[OJIV] seawater metagenome; Sea water
18048
17973
-
Val
TAC
[ENA]
¡û
>WENV183054912
OLGU01021563
[OLGU] seawater metagenome; Sea water
11
86
+
Val
TAC
[ENA]
¡û
>WENV183055017
OLGW01000892
[OLGW] seawater metagenome; Sea water
2283
2208
-
Val
TAC
[ENA]
¡û
>WENV183058099
OLHN01003747
[OLHN] seawater metagenome; Sea water
1289
1364
+
Val
TAC
[ENA]
¡û
>WENV183059128
OLHS01006462
[OLHS] seawater metagenome; Sea water
257
182
-
Val
TAC
[ENA]
¡û
>WENV183059377
OLHU01001363
[OLHU] seawater metagenome; Sea water
810
885
+
Val
TAC
[ENA]
¡û
>WENV183060246
OLHX01000364
[OLHX] seawater metagenome; Sea water
5175
5250
+
Val
TAC
[ENA]
¡û
>WENV183060577
OLHY01000352
[OLHY] seawater metagenome; Sea water
8627
8702
+
Val
TAC
[ENA]
¡û
>WENV183619364
OOFQ01002177
[OOFQ] marine metagenome; seawater
1538
1463
-
Val
TAC
[ENA]
¡û
>WENV183625206
OOGF01004302
[OOGF] marine metagenome; seawater
172
247
+
Val
TAC
[ENA]
¡û
>WENV183707488
PDWI01008698
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4
80
+
Val
TAC
[ENA]
¡û
>WENV183713817
PDWI01154472
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1508
1583
+
Val
TAC
[ENA]
¡û
>WENV183715701
PDWI01256979
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
898
975
+
Val
TAC
[ENA]
¡û
>WENV183715817
PDWI01264753
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
129
204
+
Val
TAC
[ENA]
¡û
>WENV170536028
CEWP01140113
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
314544
314621
+
Val
TAC
[ENA]
¡û
>WENV170567508
FLMP01001250
[FLMP] seawater metagenome; seawater
1730
1805
+
Val
TAC
[ENA]
¡û
>WENV170817021
MDSX01042259
[MDSX] marine metagenome; seawater
2072
1995
-
Val
TAC
[ENA]
¡û
>WENV170827489
MDSY01130194
[MDSY] marine metagenome; seawater
11
86
+
Val
TAC
[ENA]
¡û
>WENV170949092
MEHZ011354978
[MEHZ] marine metagenome; marine surface water
1001
926
-
Val
TAC
[ENA]
¡û
>C181220993
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
1193161
1193236
+
Val
TAC
-
¡û
>W1810577090
QENZ01000003
Bacteroidota
Balneicella halophila DSM 28579 [QENZ]
288994
288919
-
Val
TAC
[ENA]
¡û
>C231538784
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
2660181
2660256
+
Val
TAC
-
¡û
>C231538794
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
3830054
3829979
-
Val
TAC
-
¡û
>C121003039
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
2704946
2705023
+
Val
TAC
[Ensembl]
¡û
>C121003049
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
3915048
3914971
-
Val
TAC
[Ensembl]
¡û
>W121017435
AGRT01000021
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
24815
24738
-
Val
TAC
[ENA]
¡û
>W121017465
AGRT01000050
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
2680
2603
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK