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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152285 (19 seq.)
>W1710991026
LPXI01000050
Bacteroidota
Myroides marinus [LPXI]
379
303
-
His
GTG
[ENA]
¡û
>C171067442
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
3152527
3152603
+
His
GTG
-
¡û
>WENV181401966
OFTY01000004
[OFTY] sludge metagenome; sludge
309860
309934
+
His
GTG
[ENA]
¢þ
>W141188506
AYMS01000125
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
5997
6073
+
His
GTG
[ENA]
¡û
>C151013031
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
641538
641612
+
His
GTG
[Ensembl]
¡û
>C151066959
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
3229187
3229263
+
His
GTG
[Ensembl]
¡û
>C151072923
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
2058487
2058411
-
His
GTG
[Ensembl]
¡û
>C121010286
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1379447
1379373
-
His
GTG
[Ensembl]
¡û
>C161059433
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
3225636
3225712
+
His
GTG
[Ensembl]
¡û
>W121009115
AGEC01000015
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
49425
49349
-
His
GTG
[ENA]
¡û
>W121009242
AGEE01000018
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
84
160
+
His
GTG
[ENA]
¡û
>W121009243
AGEE01000018
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
183
259
+
His
GTG
[ENA]
¡û
>W1610029723
AXDE01000004
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
178946
179020
+
His
GTG
[ENA]
¡û
>W1610845698
LPXI01000050
Bacteroidota
Myroides marinus [LPXI]
379
303
-
His
GTG
[ENA]
¡û
>W1710027093
AXDE01000004
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
178946
179020
+
His
GTG
[ENA]
¡û
>W1710517887
FNDQ01000011
Bacteroidota
Myroides phaeus [FNDQ]
43733
43658
-
His
GTG
[ENA]
¡û
>W1710517889
FNDQ01000011
Bacteroidota
Myroides phaeus [FNDQ]
43528
43453
-
His
GTG
[ENA]
¡û
>W1710517890
FNDQ01000011
Bacteroidota
Myroides phaeus [FNDQ]
43425
43350
-
His
GTG
[ENA]
¡û
>W1710551257
FOFY01000002
Bacteroidota
Myroides profundi [FOFY]
367452
367376
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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