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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152447 (39 seq.)
>W1711043778
LRML01000001
Bacteroidota
Rufibacter roseus [LRML]
85681
85605
-
Asn
GTT
[ENA]
¡û
>W1711043833
LRMM01000031
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
24500
24426
-
Asn
GTT
[ENA]
¡û
>W131053374
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
258941
258865
-
Asn
GTT
[ENA]
¡û
>W131165378
ARBN01000001
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
57014
57088
+
Asn
GTT
[ENA]
¡û
>W131223139
AUBV01000006
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
317117
317043
-
Asn
GTT
[ENA]
¡û
>W1711707959
MSSX01000011
Bacteroidota
Algoriphagus faecimaris [MSSX]
116036
116112
+
Asn
GTT
[ENA]
¡û
>WENV180693356
OCZS011178206
[OCZS] soil metagenome; soil
293
219
-
Asn
GTT
[ENA]
¢þ
>WENV181234786
OFEU01008641
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
152
226
+
Asn
GTT
[ENA]
¢þ
>W141151943
AXBK01000009
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
356315
356391
+
Asn
GTT
[ENA]
¡û
>WENV181854950
OGWK01041838
[OGWK] freshwater metagenome; freshwater
214
140
-
Asn
GTT
[ENA]
¢þ
>WENV170192579
CEPF01026067
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
726
650
-
Asn
GTT
[ENA]
¢þ
>WENV170193031
CEPG01061996
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1744
1668
-
Asn
GTT
[ENA]
¢þ
>WENV170193881
CEPI01058985
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
665
589
-
Asn
GTT
[ENA]
¢þ
>WENV170409031
CEUI01140079
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
660
736
+
Asn
GTT
[ENA]
¢þ
>WENV170639152
JFJP01001177
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13370
13446
+
Asn
GTT
[ENA]
¢þ
>WENV170652012
JRYG01040220
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1359
1285
-
Asn
GTT
[ENA]
¢þ
>WENV170722913
LSQX01248222
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18290
18214
-
Asn
GTT
[ENA]
¢þ
>WENV170829000
MDSZ01000938
[MDSZ] marine metagenome; seawater
2742
2666
-
Asn
GTT
[ENA]
¢þ
>WENV170993368
MWWB01278318
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
71
145
+
Asn
GTT
[ENA]
¢þ
>W1910237077
FPJX01000004
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
276058
275983
-
Asn
GTT
[ENA]
¡û
>W1911775213
QXML01000002
Bacteroidota
Algoriphagus lacus N3 [QXML]
351465
351391
-
Asn
GTT
[ENA]
¡û
>W1810400066
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
5409287
5409213
-
Asn
GTT
[ENA]
¡û
>W1810400588
PYGF01000006
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
93642
93568
-
Asn
GTT
[ENA]
¡û
>W1810483295
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
353268
353194
-
Asn
GTT
[ENA]
¡û
>W1810533374
QCZK01000003
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
194633
194707
+
Asn
GTT
[ENA]
¡û
>W1810789494
QRGR01000008
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
38738
38664
-
Asn
GTT
[ENA]
¡û
>C151071882
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
3803101
3803175
+
Asn
GTT
[Ensembl]
¡û
>C161028435
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
2027919
2027845
-
Asn
GTT
[Ensembl]
¡û
>C161043237
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
1486663
1486737
+
Asn
GTT
[Ensembl]
¡û
>C161046179
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
3534818
3534892
+
Asn
GTT
[Ensembl]
¡û
>C161076975
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
1706478
1706554
+
Asn
GTT
-
¡û
>W1610050109
BBFN01000007
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
123419
123493
+
Asn
GTT
[ENA]
¡û
>W1610885077
LRML01000001
Bacteroidota
Rufibacter roseus [LRML]
85681
85605
-
Asn
GTT
[ENA]
¡û
>W1610885132
LRMM01000031
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
24500
24426
-
Asn
GTT
[ENA]
¡û
>W1710046508
BBFN01000007
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
123419
123493
+
Asn
GTT
[ENA]
¡û
>W1710539779
FNVR01000012
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
123543
123617
+
Asn
GTT
[ENA]
¡û
>W1710562648
FOPC01000001
Bacteroidota
Algoriphagus hitonicola [FOPC]
341718
341644
-
Asn
GTT
[ENA]
¡û
>W1710571379
FOVW01000001
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
377135
377059
-
Asn
GTT
[ENA]
¡û
>W1710579005
FPCA01000002
Bacteroidota
Pontibacter akesuensis [FPCA]
591815
591739
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK