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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152452 (29 seq.)
>W1711188837
LWQU01000141
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
55361
55437
+
Arg
ACG
[ENA]
¡û
>C171041992
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
1072882
1072806
-
Arg
ACG
-
¡û
>C171074576
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
732795
732719
-
Arg
ACG
-
¡û
>C171074628
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
742635
742559
-
Arg
ACG
-
¡û
>C171074680
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
742689
742613
-
Arg
ACG
-
¡û
>C171074732
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
739215
739139
-
Arg
ACG
-
¡û
>C171074784
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
742636
742560
-
Arg
ACG
-
¡û
>C171074836
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
732855
732779
-
Arg
ACG
-
¡û
>W131094258
AONQ01000035
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
34212
34136
-
Arg
ACG
[ENA]
¡û
>C009858
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
732850
732774
-
Arg
ACG
[Ensembl]
¡û
>C013753
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
4667500
4667424
-
Arg
ACG
[Ensembl]
¡û
>w001867
AAAP01003864
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
20057
20135
+
Arg
ACG
[ENA]
¡û
>W141222892
BACU01000261
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
24838
24762
-
Arg
ACG
[ENA]
¡û
>WENV183687659
ORMF011174880
[ORMF] groundwater metagenome; groundwater
3404
3328
-
Arg
ACG
[ENA]
¢þ
>WENV170003508
AGTN01362379
[AGTN] bioreactor metagenome; poplar biomass
3172
3096
-
Arg
ACG
[ENA]
¢þ
>C181058291
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
2824163
2824239
+
Arg
ACG
-
¡û
>W141803715
JPGX01000297
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
10300
10376
+
Arg
ACG
[ENA]
¡û
>W1910498963
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
195537
195613
+
Arg
ACG
[ENA]
¡û
>W1910913966
NHRY01000201
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
6528
6452
-
Arg
ACG
[ENA]
¡û
>W1911139242
NOXS01000033
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
228605
228529
-
Arg
ACG
[ENA]
¡û
>C151004048
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
735482
735406
-
Arg
ACG
[Ensembl]
¡û
>C151004100
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
739304
739228
-
Arg
ACG
[Ensembl]
¡û
>C151004152
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
732669
732593
-
Arg
ACG
[Ensembl]
¡û
>W1511510915
JXSL01000030
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
518593
518517
-
Arg
ACG
[ENA]
¡û
>W1511569447
LAJY01000320
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
4446
4522
+
Arg
ACG
[ENA]
¡û
>W1511569468
LAJY01000836
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
642
566
-
Arg
ACG
[ENA]
¡û
>W11157271
AFBX01000392
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
1020
944
-
Arg
ACG
[ENA]
¡û
>C161108367
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
631155
631231
+
Arg
ACG
-
¡û
>W1610990956
LWQU01000141
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
55361
55437
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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