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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152474 (74 seq.)
>W1711048709
LRPX01000028
Fusobacteriota
Fusobacterium equinum [LRPX]
103
179
+
Arg
ACG
[ENA]
¡û
>W1711138572
LVDY01000035
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
86801
86877
+
Arg
ACG
[ENA]
¡û
>W1711138615
LVDZ01000062
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
86802
86878
+
Arg
ACG
[ENA]
¡û
>W1711138639
LVEA01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
29128
29204
+
Arg
ACG
[ENA]
¡û
>W1711139092
LVEQ01000021
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
16279
16203
-
Arg
ACG
[ENA]
¡û
>W1711139118
LVER01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
13116
13040
-
Arg
ACG
[ENA]
¡û
>W1711139176
LVES01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
15859
15783
-
Arg
ACG
[ENA]
¡û
>W1711139211
LVET01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
13124
13048
-
Arg
ACG
[ENA]
¡û
>W1711139256
LVEU01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
28581
28657
+
Arg
ACG
[ENA]
¡û
>W1711139326
LVEV01000048
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
86350
86426
+
Arg
ACG
[ENA]
¡û
>W1711139328
LVEW01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
5312
5236
-
Arg
ACG
[ENA]
¡û
>W1711139406
LVEX01000071
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
86727
86803
+
Arg
ACG
[ENA]
¡û
>W1711139450
LVEY01000069
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
86797
86873
+
Arg
ACG
[ENA]
¡û
>W1711139489
LVEZ01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
86803
86879
+
Arg
ACG
[ENA]
¡û
>W1711139506
LVFA01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
28569
28645
+
Arg
ACG
[ENA]
¡û
>W1711139568
LVFB01000071
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
86803
86879
+
Arg
ACG
[ENA]
¡û
>W1711139614
LVFC01000054
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
86782
86858
+
Arg
ACG
[ENA]
¡û
>W1711139635
LVFD01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
29334
29410
+
Arg
ACG
[ENA]
¡û
>W1711139710
LVFE01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
86824
86900
+
Arg
ACG
[ENA]
¡û
>W141054925
AOJP01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
88182
88258
+
Arg
ACG
[ENA]
¡û
>WENV180856861
ODKZ01113292
[ODKZ] human metagenome; G_DNA_Tongue dorsum
126
202
+
Arg
ACG
[ENA]
¢þ
>WENV181769132
OGRA01014082
[OGRA] human gut metagenome; faeces
805
729
-
Arg
ACG
[ENA]
¢þ
>WENV182426769
OIHR01002494
[OIHR] human gut metagenome; human gut
199
275
+
Arg
ACG
[ENA]
¢þ
>WENV182478382
OIQN01000552
[OIQN] human gut metagenome; human gut
906
982
+
Arg
ACG
[ENA]
¢þ
>WENV182499655
OITU01000004
[OITU] human gut metagenome; human gut
3639
3715
+
Arg
ACG
[ENA]
¢þ
>WENV182499727
OITV01000009
[OITV] human gut metagenome; human gut
1387
1311
-
Arg
ACG
[ENA]
¢þ
>WENV182501955
OIUG01003680
[OIUG] human gut metagenome; human gut
497
421
-
Arg
ACG
[ENA]
¢þ
>W141273970
JAAC01000186
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
9129
9053
-
Arg
ACG
[ENA]
¡û
>W141273990
JAAD01000117
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
406
482
+
Arg
ACG
[ENA]
¡û
>W141274000
JAAE01000004
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
45532
45456
-
Arg
ACG
[ENA]
¡û
>W141274037
JAAF01000021
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
6586
6662
+
Arg
ACG
[ENA]
¡û
>W141274057
JAAG01000011
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
37571
37495
-
Arg
ACG
[ENA]
¡û
>W141274092
JAAH01000053
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
39368
39292
-
Arg
ACG
[ENA]
¡û
>WENV182984220
OKZL01000248
[OKZL] human gut metagenome; human gut
133
209
+
Arg
ACG
[ENA]
¢þ
>WENV183013486
OLEG01000290
[OLEG] human gut metagenome; human gut
142
218
+
Arg
ACG
[ENA]
¢þ
>WENV183017597
OLEW01000847
[OLEW] human gut metagenome; human gut
972
896
-
Arg
ACG
[ENA]
¢þ
>WENV183115444
OLNQ01009145
[OLNQ] human gut metagenome; faeces
4561
4637
+
Arg
ACG
[ENA]
¢þ
>C181161115
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
365228
365152
-
Arg
ACG
-
¡û
>C181161148
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
259367
259443
+
Arg
ACG
-
¡û
>C191015373
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
2090293
2090369
+
Arg
ACG
-
¡û
>C191016044
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
2242811
2242887
+
Arg
ACG
-
¡û
>C191113367
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1226623
1226547
-
Arg
ACG
-
¡û
>C191132387
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
333332
333408
+
Arg
ACG
-
¡û
>W141559483
JHWT01000020
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
87125
87201
+
Arg
ACG
[ENA]
¡û
>W09118636
ACDD01000075
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
6603
6679
+
Arg
ACG
[ENA]
¡û
>W09118753
ACDG01000128
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
11919
11843
-
Arg
ACG
[ENA]
¡û
>W09120644
ACET01000030
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
54058
53982
-
Arg
ACG
[ENA]
¡û
>W1911160141
NPNE01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
86619
86695
+
Arg
ACG
[ENA]
¡û
>W1911160188
NPNF01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
86619
86695
+
Arg
ACG
[ENA]
¡û
>W1610026553
AUZI01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
87609
87685
+
Arg
ACG
[ENA]
¡û
>W121001942
ADLZ01000029
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
52227
52303
+
Arg
ACG
[ENA]
¡û
>W121066994
AJSY01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
28514
28590
+
Arg
ACG
[ENA]
¡û
>W121112310
ALKK01000035
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
86471
86547
+
Arg
ACG
[ENA]
¡û
>W1610889838
LRPX01000028
Fusobacteriota
Fusobacterium equinum [LRPX]
103
179
+
Arg
ACG
[ENA]
¡û
>W1610949612
LVDY01000035
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
86801
86877
+
Arg
ACG
[ENA]
¡û
>W1610949655
LVDZ01000062
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
86802
86878
+
Arg
ACG
[ENA]
¡û
>W1610949679
LVEA01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
29128
29204
+
Arg
ACG
[ENA]
¡û
>W1610950100
LVEQ01000021
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
16279
16203
-
Arg
ACG
[ENA]
¡û
>W1610950126
LVER01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
13116
13040
-
Arg
ACG
[ENA]
¡û
>W1610950184
LVES01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
15859
15783
-
Arg
ACG
[ENA]
¡û
>W1610950219
LVET01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
13124
13048
-
Arg
ACG
[ENA]
¡û
>W1610950264
LVEU01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
28581
28657
+
Arg
ACG
[ENA]
¡û
>W1610950334
LVEV01000048
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
86350
86426
+
Arg
ACG
[ENA]
¡û
>W1610950336
LVEW01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
5312
5236
-
Arg
ACG
[ENA]
¡û
>W1610950414
LVEX01000071
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
86727
86803
+
Arg
ACG
[ENA]
¡û
>W1610950458
LVEY01000069
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
86797
86873
+
Arg
ACG
[ENA]
¡û
>W1610950497
LVEZ01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
86803
86879
+
Arg
ACG
[ENA]
¡û
>W1610950514
LVFA01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
28569
28645
+
Arg
ACG
[ENA]
¡û
>W1610950576
LVFB01000071
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
86803
86879
+
Arg
ACG
[ENA]
¡û
>W1610950622
LVFC01000054
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
86782
86858
+
Arg
ACG
[ENA]
¡û
>W1610950643
LVFD01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
29334
29410
+
Arg
ACG
[ENA]
¡û
>W1610950718
LVFE01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
86824
86900
+
Arg
ACG
[ENA]
¡û
>W1710022602
AUZI01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
87609
87685
+
Arg
ACG
[ENA]
¡û
>W1710510389
FMXX01000025
Fusobacteriota
Fusobacterium necrophorum [FMXX]
29121
29197
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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