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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152476 (19 seq.)
>W1711705087
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
17024
16948
-
Val
CAC
[ENA]
¡û
>W131051991
AMYG01000045
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
1879
1803
-
Val
CAC
[ENA]
¡û
>W141238351
BBKT01000036
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
8966
8890
-
Val
CAC
[ENA]
¡û
>W141276458
JADV01000002
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
8933
9009
+
Val
CAC
[ENA]
¡û
>WENV170676882
LDZS01002996
[LDZS] terrestrial metagenome; oil reservoir sample K3
2279
2203
-
Val
CAC
[ENA]
¢þ
>W09135031
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
3723
3799
+
Val
GAC
[ENA]
¡û
>W09135032
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
6452
6528
+
Val
CAC
[ENA]
¡û
>W09135157
ACVK01000027
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
5031
4955
-
Val
GAC
[ENA]
¡û
>W09135180
ACVK01000044
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
14825
14749
-
Val
CAC
[ENA]
¡û
>C10113407
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1553032
1552956
-
Val
GAC
[Ensembl]
¡û
>C10113408
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1550303
1550227
-
Val
CAC
[Ensembl]
¡û
>C10113463
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1537623
1537547
-
Val
GAC
[Ensembl]
¡û
>C10113465
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1532009
1531933
-
Val
CAC
[Ensembl]
¡û
>C11123306
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
878863
878939
+
Val
CAC
[Ensembl]
¡û
>W11150423
AEVQ01000002
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
237206
237130
-
Val
CAC
[ENA]
¡û
>W1610043648
BAZY01000005
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
118813
118889
+
Val
GAC
[ENA]
¡û
>W1610043663
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
328
404
+
Val
CAC
[ENA]
¡û
>W1710040808
BAZY01000005
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
118813
118889
+
Val
GAC
[ENA]
¡û
>W1710040823
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
328
404
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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